XLOC_021917 (nfatc2a)


Basic Information

Item Value
gene id XLOC_021917
gene name nfatc2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39089574 ~ 39164866 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043401
ATGAGCTCTTTTTACGGCGAAAAAGCTGCGTTAGGACTGGCAGCGGAGCTCAGTCAGGTGAACTGTCAGGATGAGCTGGAGTTTGACTACCTTTTTGAGTATGAAAACCAAACAGGACTTCAAGATGAGCAAGGCATCTCCTCACACAGCTCTCCTCCGAGCCTCTCCTATCCTCCAGAGGGCGTTGCCCCGTACGCCATCAAGCCGTGTGCGTCCTCCTATGTTGACGTCCACACTGAAGGCTTTTCTGCGTACGAGCAACTGGAGGCCAAGGGCTACCTGGAGCACGCCCGACCCAACAACCAGGCCTTGAGCCCCAGAATCGAAATCACACCTTCACGTGAGCTCTACAATCATGGTCAAAACCAGCTCATAAACACCAGCCCCAGTCCTGGACTCACCGTGCCAGGTCAAGATCCGTTAGCCTATCGGGAGCCACAATGCTTGAGTCCCGCCAGTAGCAATTCATCCACTTCCTGGCATTCAGAAAACCTCTCACCCTGGGCATCGCCCTGCGTTTCGCCCAGTAACAGCCAGCTTTCTGGAGACCTCTGTCCACGACTGCAGGGCGTCCATACGGGGTCTCCAAGAACCAGTCCGGGCACTTCTCCACAGACCACCAGTCTGTCTGAGGACGCTTGCATTGGCCCGCGCTCTCCCTCCCCCCGACCTGGATCGCGTTCAACCTCCCCTCTATGCAAACGCACCTACGAGATGTACACAAACCCAAACCTTGTGCCTGTGGCCCGTTCTCGCAGCCCGTCGCCCCACGGTGGCCACAAGGAGCATCACGTCAATCATTACATCTCAAATAATGGCGTAAATGGCTTTAGTGTTGGCCAGGCGGCTTCTGTTCCTACTAAAATCGTAAAGACCAACCAGCAGGGCTACCCCCTTTATTCAGACAACCACACTGAGGGTTACCTGCTGTCCTGTGAGCAGGATATGAAGGGCAAACCTGGCCCCGAGCCTTTCTTCGTCATCCCTCAAATCTGGCCCAAACAGCTGGTACCTGGCATGTGCAGCATCCCTGTGTCGTCTCTGCCGTCTCTGGAATGGCCTCTGCCGAGCCGCACGGATCAGCTGGAGCTCCACATCGAGGTGCAGCCCAAACCCCATCACAGGGCTCACTATGAGACAGAGGGCAGCCGCGGGGCCGTCAAAGCCCCGACAGGAGGACACCCGGTGGTCCAGTTACGTGGATACAGAGGCAAGGAGCCGCTGGGTTTGCAGATCTTCATTGGCACAGCAGACGAGCGAATCCTGAAACCTCACGCTTTCTATCAAGTCCATCGCATAACTGGTAAAACAGTCACCACCACCAGCTATGAGAAGATAGTTAATGGTACCAAAGTTCTGGAAATTCCCCTCGAGCCAAAGAATAACATGAAAGCAATAATTGACTGTGCGGGGATTCTCAAGCTTCGCAATGCCGACATCGAGCTGCGGAAAGGAGAGACGGATATCGGCAGGAAAAACACGCGTGTACGACTGGTATTCCGTGTTCATATTCCCCAGCAAAGCGGCCAGTATCTGTCTCTACAAATTGCTTCACATCCTATTGAATGCTCTCAAAGATCTGCTCATGAGCTGCCCATGGTGGAAAAGCAGGACATGGATGCTTGTTCGGTTCTTGGAGGGCAGCAGATGATCCTCACCGGCCAGAACTTCAGCGCAGATTCAAAGGTGATCTTCATGGAGAAAACTCATGATGGACAGCAAATTTGGGAACTGGAAGCAACAGTTGACAAAGACAAAAGTCAAGCAAGCATGCTGTTCATTGAGGTTCCTCCATATAGAGATCCGTCCATTTGCCATGCTGTCAAGGTCAATTTCTATGTAATAAATGGGAAACGGAAGCGCAGTCAACCTCAGCATTTCACCTACACACCTCTACCAGTACCATCTATTAAGACAGAGCCAGTGGATGAATATGAATCTGGACGAATGGGCTATTCCTTGTCACAGATGCTGGGAGTTTCTCCCCAGTCGTACTATAGCCCTCGTGGGGTGATCCCCCCAGACAGCCTGGTCCCTGGCCTTGTCCCATGTCAGCAGACCCGCCTGGGTGTCTCTCCTCCGGACCACCGATTTCAACAGCAGAGCCCTGCCATAATGTACTCCCGTACTGGAAAAAGCTCATCCAGCAGTCCCATTTACTCTCAGACGGCAGCCACAATGATACCAGACTCCCATCGATCAGTTCTGGTCCACACCGGTTCCCCAGCCCAGTCCTCTCATCTGGGAAGCCAACATCCCACCAACCAGCATCCCTCAATCATCCAATTTTCTCCAACCAATCATCACCTGCTCCGAGGAGGAGGAGATCCCCCTGCACCACCACCTCCTGAACATCAGCACATCATTTATTGTGAGGGCTATAATCAGCATGGCCCTCAACCCACTGGGGCAAACCGTTCCCCAGCACCAGCCCAAGCGGCCCAACACCCTCAGAATTACCCCACAGTCATCCAGCAGCAGCCTTTCCTCCAGAGAGTGGCCAAAGACAGGTCACCGTCTGCCCAAGTTGAGCCCCAGAGAAGTTCCTCCGCAGAAGAACCGAGAGCCAATGTACCTGGACGAGTCACGGTCAAGCAGGAGAATCTGGATCAGGCCTATCTTGATGATGTGAATGAGATCATCAGGAAGGATCTGACAGGAGTGCATGGCAGGAGTCAGACGTAG

Function

symbol description
nfatc2a Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human NFATC2 (nuclear factor of activated T cells 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120913-4 Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human NFATC2 (nuclear factor of activated T cells 2).

Ensembl:

ensembl_id ENSDARG00000100927

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043401 True 2685 mRNA 0.54 10 39089574 39164866

Neighbor

gene id symbol gene type direction distance location
XLOC_021916 sall4 coding upstream 25977 38940700 ~ 39063597 (+)
XLOC_021915 zfp64 coding upstream 270458 38806861 ~ 38819116 (+)
XLOC_021914 NA coding upstream 534279 38537568 ~ 38555295 (+)
XLOC_021913 FO904868.1 coding upstream 753690 38335760 ~ 38335884 (+)
XLOC_021912 CABZ01070579.1 coding upstream 792785 38266163 ~ 38296789 (+)
XLOC_021918 CABZ01054023.1 coding downstream 18380 39183246 ~ 39184309 (+)
XLOC_021919 kcng1 coding downstream 116363 39281229 ~ 39333313 (+)
XLOC_021920 src coding downstream 181908 39346774 ~ 39450700 (+)
XLOC_021921 mical1 coding downstream 297123 39461989 ~ 39528988 (+)
XLOC_021922 camk1gb coding downstream 393642 39558508 ~ 39597901 (+)
XLOC_021909 NA non-coding upstream 995014 38091326 ~ 38094560 (+)
XLOC_021907 NA non-coding upstream 1184878 37904470 ~ 37904696 (+)
XLOC_021926 NA non-coding downstream 587622 39752488 ~ 39752964 (+)
XLOC_021932 CABZ01067001.1 non-coding downstream 1141378 40306244 ~ 40306371 (+)
XLOC_021935 CR354556.1 non-coding downstream 1301636 40466502 ~ 40472088 (+)
XLOC_021936 CR354556.3 non-coding downstream 1312354 40477220 ~ 40480582 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_00716122_00741331 NA coding CI01000001 null 716103 ~ 741620 (-)