XLOC_022003 (G3BP2)


Basic Information

Item Value
gene id XLOC_022003
gene name G3BP2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 44078929 ~ 44110756 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043522
cgcgcgtgagCGAGCTGAGAGCGGTGGACGCGCGCACGTCGGCGTCTATTTGTGCATTTCGGTTCGGCGGGTGTCGGACGTTTACAACAGGTAAAGCAGGAGTCGGTCAGTCGTCCCTCGCCCCGGTGTGTGCGGAGAAGCGTGCGGAGAGAGCGGCAGCGCGGCGGTTAGCAGCTCCGTCACAGCAGtgtgagtgtgcgtgtgtgtgtgtgtgtgtgagagagagagatggtgaTGGAGAAGCCGAGCCCCCTGCTCGTAGGACGCGAGTTTGTGCGGCAGTACTACACACTTCTGAATAAAGCCCCTGATTACCTGCACAGATTTTACGGCAGGAACTCCTCATATGTTCACGGAGGTCTGGACAGCAATGGCAAGCCGGAGGAGGCCGTGTACGGTCAGGCGgagatcCACAAGAAGGTGATGTCTCTGCAGTTCAGCGAGTGTCACACTAAGATCCGTCATGTTGATGCTCACGCCACTCTTGGAGACGGAGTGGTGGTGCAGGTGATGGGGGAGCTGTCCAACAGCGGGCGGCCCATGAGAAGGTTCATGCAGACCTTTGTGCTCGCACCcgagggatcTGCTGTCAACAAGTTCTATGTGCACAATGACATCTTCCGCTATGAGGAGGAGGTGTTCGGAGACTCCGAAGCTGAACTGGGAGAGTCTGAAGaagaggaggtggaggaggaacCAGTGGAGACTCATGCTTCCCCTGAACCAGCACAGGACCGGCCCAGCAGCACCACCTACTATGAGCCGCCGCCACCTGTCAgTAATGGAGTGGAGGAACAGCAGGAGGAGGCGGTCCCAGAAGTGGAGCCAGAGGTGGAGCCTGAGGCGCTGGCCAGTCAGGAGCCAGAGGCAGAACTTAGCACTGAGGCGGAGTTACAGGTGGCAGAAGCAGAGCCTGAGGAAGAGGAGAAACTGCCAGAGGAGGAGAGAGGCTCCACCCCTGGCCTTGCCCTGACTCCGCCCCCTCAGACTCCAGAACCACCCAAGGCGTTCTCATGGGCTCTGGTGACCAGTAAGAATCTCCCTCCGGCTGGAGCTCTTCCCGCCTCTGGAATCTCTCCTCATGTGGTCAAAGCCTCCAGTGTTCAGccacGGGTGGAGCTCAAACAGGACGGTCCATCATCACTGTCCCGAGATCAGAGGAGAGAGAGACCAGGATTTACCCCACGAGGAGCCAGAGCTGATGGCGGTGGTTCGGAGGCTTCAGGTGGGAAGCCGTACATCAGCTTTAAAGGTCGTGGGGACGGTGATGCAGGTGATACGGAGGGCCGCAGGTCTTTTCGTTATCCCGACAGTCATCAGCTGTTTGTTGGAAATCTTCCTCATGACATCGACGAGGGTGAACTGAAGGACTTCTTCATGACGTTTGGAAATGTGGTGGAGATGAGAATCAACACCAAAGGCGTCGGAGGAAAACTGCCCAACTTTGGATTTGTGGTGTTTGATGATTCAGATCCGGTGCAGAGGATTCTGGGAGCAAAGCCCATCATGTTTCGAGGTGAAGTGCGTCTGAATGTGGAGGAGAAGAAGACCAGAGCGGTCCGTGAGCGTGAGACCAGAGGGCCGCCAGACGCCCGCCGCGGGCCCAGAGGCATAATGGGTAACGGGATGGGGCGTGAGCGAGACTCCCGTGGGCCGCCGGCCTCCAGAGGAGGGATGGGAGCAGGACGAGGCCAGAGCGGAGAGAGCCGCTTCACCGGCCCGCGCACACGCTAATCGCAGAACACACCTTTCTCTATTCAGTCTTTGTTGTCGTTTTCTCTccacgtctctctctctctggctttCGGACTGTGACTGGCCATCAAAGACTCAACAGAAACTCAGCTTTGTATTATTCCCGTCATGATCTCGCcgtgagcttttttttttttttgtcctataAAACACAAGTGGAATGTCACGAAGGGGTTTCCTCATGGAACGGATCTCTCACATTTTATAACGGACGAACATCAGCGCTTCGTAAATCAGTGCTCCGtgtacactttatttattttcctcgTAAATAAAACAGTGGTGGTGCCTTAACTCGATTCTcgccctttctgtctgtctgtccgtctgtctgtgtgGATCGGCAGTATTTCAGGTCTGGTTCAATCTGACGGAGTCCATGATTCTCTGTTTTTCTTTGCATGgctgtttttgtttcgttttttggGACGGTCTTTACGCACGGCGTTCTGAAGCTTTTCCCCACGTGTTTGCTTCAGACTGGACTTCATTCGGCTTCAGCAGGTTTTTGTTTTGAATGTGTTTTTCGACTTTCAATAAACTACTGAAATCTGC
>TCONS_00043523
gagCGAGCTGAGAGCGGTGGACGCGCGCACGTCGGCGTCTATTTGTGCATTTCGGTTCGGCGGGTGTCGGACGTTTACAACAGGTAAAGCAGGAGTCGGTCAGTCGTCCCTCGCCCCGGTGTGTGCGGAGAAGCGTGCGGAGAGAGCGGCAGCGCGGCGGTTAGCAGCTCCGTCACAGCAGtgtgagtgtgcgtgtgtgtgtgtgtgtgtgagagagagagatggtgaTGGAGAAGCCGAGCCCCCTGCTCGTAGGACGCGAGTTTGTGCGGCAGTACTACACACTTCTGAATAAAGCCCCTGATTACCTGCACAGATTTTACGGCAGGAACTCCTCATATGTTCACGGAGGTCTGGACAGCAATGGCAAGCCGGAGGAGGCCGTGTACGGTCAGGCGgagatcCACAAGAAGGTGATGTCTCTGCAGTTCAGCGAGTGTCACACTAAGATCCGTCATGTTGATGCTCACGCCACTCTTGGAGACGGAGTGGTGGTGCAGGTGATGGGGGAGCTGTCCAACAGCGGGCGGCCCATGAGAAGGTTCATGCAGACCTTTGTGCTCGCACCcgagggatcTGCTGTCAACAAGTTCTATGTGCACAATGACATCTTCCGCTATGAGGAGGAGGTGTTCGGAGACTCCGAAGCTGAACTGGGAGGTAAAACGTCCAAGTGATTGGTTTCATTTGCAGTGATTGATCTTCCTGATTTCTTACAGTATTTGCAATGCTGGGTTAAATGCTGGGTTTATGCCGTAAAATGACTACATTAGGGGTGCACAGTATATAGAAAATGCAATACTGCATTTAATATAGTGTGCAGTATTCACAGAGATGTCTGatattttattgtgtgtgtgctaTGCATTTGTGTTGCATGCATTTTATCAAAATATGAGCAATCGGATGGGACCTTGTAAGTCAAGAAGGTAAATGAtagcc
>TCONS_00043524
tgtgagtgtgcgtgtgtgtgtgtgtgtgtgagagagagagatggtgaTGGAGAAGCCGAGCCCCCTGCTCGTAGGACGCGAGTTTGTGCGGCAGTACTACACACTTCTGAATAAAGCCCCTGATTACCTGCACAGATTTTACGGCAGGAACTCCTCATATGTTCACGGAGGTCTGGACAGCAATGGCAAGCCGGAGGAGGCCGTGTACGGTCAGGCGgagatcCACAAGAAGGTGATGTCTCTGCAGTTCAGCGAGTGTCACACTAAGATCCGTCATGTTGATGCTCACGCCACTCTTGGAGACGGAGTGGTGGTGCAGGTGATGGGGGAGCTGTCCAACAGCGGGCGGCCCATGAGAAGGTTCATGCAGACCTTTGTGCTCGCACCcgagggatcTGCTGTCAACAAGTTCTATGTGCACAATGACATCTTCCGCTATGAGGAGGAGGTGTTCGGAGACTCCGAAGCTGAACTGGGAGAGTCTGAAGaagaggaggtggaggaggaacCAGTGGAGACTCATGCTTCCCCTGAACCAGCACAGGACCGGCCCAGCAGCACCACCTACTATGAGCCGCCGCCACCTGTCAgTAATGGAGTGGAGGAACAGCAGGAGGAGGCGGTCCCAGAAGTGGAGCCAGAGGTGGAGCCTGAGGCGCTGGCCAGTCAGGAGCCAGAGGCAGAACTTAGCACTGAGGCGGAGTTACAGGTGGCAGAAGCAGAGCCTGAGGAAGAGGAGAAACTGCCAGAGGAGGAGAGAGGCTCCACCCCTGGCCTTGCCCTGACTCCGCCCCCTCAGACTCCAGAACCACCCAAGGCGTTCTCATGGGCTCTGGTGACCAGTAAGAATCTCCCTCCGGCTGGAGCTCTTCCCGCCTCTGGAATCTCTCCTCATGTGGTCAAAGCCTCCAGTGTTCAGccacGGGTGGAGCTCAAACAGGACGGTCCATCATCACTGTCCCGAGATCAGAGGAGAGAGAGACCAGGATTTACCCCACGAGGAGCCAGAGCTGATGGCGGTGGTTCGGAGGCTTCAGGTGGGAAGCCGTACATCAGCTTTAAAGGTCGTGGGGACGGTGATGCAGGTGATACGGAGGGCCGCAGGTCTTTTCGTTATCCCGACAGTCATCAGCTGTTTGTTGGAAATCTTCCTCATGACATCGACGAGGGTGAACTGAAGGACTTCTTCATGACGTTTGGAAATGTGGTGGAGATGAGAATCAACACCAAAGGCGTCGGAGGAAAACTGCCCAACTTTGGATTTGTGGTGTTTGATGATTCAGATCCGGTGCAGAGGATTCTGGGAGCAAAGCCCATCATGTTTCGAGGTGAAGTGCGTCTGAATGTGGAGGAGAAGAAGACCAGAGCGGTCCGTGAGCGTGAGACCAGAGGGCCGCCAGACGCCCGCCGCGGGCCCAGAGGCATAATGGGTAACGGGATGGGGCGTGAGCGAGACTCCCGTGGGCCGCCGGCCTCCAGAGGAGGGATGGGAGCAGGACGAGGCCAGAGCGGAGAGAGCCGCTTCACCGGCCCGCGCACACGCTAATCGCAGAACACACCTTTCTCTATTCAGTCTTTGTTGTCGTTTTCTCTccacgtctctctctctctggctttCGGACTGTGACTGGCCATCAAAGACTCAACAGAAACTCAGCTTTGTATTATTCCCGTCATGATCTCGCcgtgagcttttttttttttttgtcctataAAACACAAGTGGAATGTCACGAAGGGGTTTCCTCATGGAACGGATCTCTCACATTTTATAACGGACGAACATCAGCGCTTCGTAAATCAGTGCTCCGtgtacactttatttattttcctcgTAAATAAAACAGTGGTGGTGCCTTAACTCGATTCTcgccctttctgtctgtctgtccgtctgtctgtgtgGATCGGCAGTATTTCAGGTCTGGTTCAATCTGACGGAGTCCATGATTCTCTGTTTTTCTTTGCATGgctgtttttgtttcgttttttggGACGGTCTTTACGCACGGCGTTCTGAAGCTTTTCCCCACGTGTTTGCTTCAGACTGGACTTCATTCGGCTTCAGCAGGTTTTTGTTTTGAATGTGTTTTTCGACTTTCAATAAACTACTGAAATCTGCAACAGCAGCGTTgaatttgattgtttatttggaGCTAGTGCAATTTTGCTTGCTATGTTTCAtattaatatgcaaatgagatttatattcaatcatttctgtagcactttcacaatgtagactgtcaaagcagcttcacatagaagattttagtcaattgaaactgtcagtccagttttcagagttgaggtTCTGTTCAGAAGTCCAAtcactgaagagtaaatccatcgatgtgcagctccacaagtcctaaaccaagctAGCCAGGGGtgacagtggaggaacaaacgtcaccaattgaccaaagtgaaggggaaaaaacctagagagaaatgtttattaatgttccTCTGGCTAAATgttctgtgcagagctgcagtgtaggcgctggacgtccatcatggagaagttgcaggtgtgagtaggtcaccggtaggtgttcaggctggcccacgggatcTATGCGGAGAtttgtctgtcactggggtctttcagtaATCAGTCTCACGctctcctccatgaccaccactgcatctgctcaggatacggcctggtccaggattatggagacctctagaaaACTATGGTTGGCATCTTCTCTTCACAGGTCTGAAAACTGCTTTATATGCAAATGTTTTACAGTGCTCGGCATAATTGAgttcaccccattttgaaaatgaatatttttctccatttctcagtgaatatgggcagtgcatttaaacaaaacagatttattaaacagatatatttattaaaataatattttagtcaccaaacatatctaggaatttaaagataataccgttaaattcaagctaaattttgaagaaaaaaaaatacagcccacaatatttcacctaaaatatttttgcttctcttgatttttcctctttttaaacttgtatttaatacttttctataacatataaatttggctgaactagtttttggaccgttatggtaagttaatttgttagataagctccttATTTGGCTGCAGTACTGACTAATCCAGtgaatatgcacaaatataatattgtatagcttcctgttaaaaatatgaGCTTTATagttttgtgaggggtgtacttatgtatgctgagcactgtgcatGCTGATATTCCAAAGTTTTCTGTAATATTATTGAACAAGCAAATTCATTTAAAGTTCAGTtcacctttttaaaataaacaaagttaaataaatgtGGTGATTATATCAGTGCTTCACTGATGATCTGAAATGCATCTGAAGTGACTTATTGTAGGCTGTTAATTGTACATTCGGAATTAAATTAGCCACAGTTGACAGGAAGTTGCACTAAAATtaaaggaagtttttttttttattgcattttaaaaactttactATAACAAGGAAGTTTCCAGCCAGACCATAATAGTAttacattaagggctctattttgatgatccatgtgCAAAGCACAGGACGCAAACGCATTAATGATGTGTCAcaatccacttttgctttttttaaggactgaaaaatccgctttgcgccgtggccatggtctaacagggttgagctgaTTCtcttgagttataggtgtgttttgagaataaaccaattagagtctcatctctcattccctttaagagtcagttgcgtcgctccataagcgcatttgctatttacatggtggactttgtaagtgtaaaaactgaaattttgagatcagcaaaaccagcattgaaacaAGCAAGACCAACATTGAGACCGGCAAGACCAACATTGAGACCAGcaggaccagcattgagaccggcaaaaccagcattgagaccagcaagaccaacaTTGAGACCAGcaggaccagcattgagaccggcaaaaccagcattgaaacaAGCAAGACCAACATTGAGACCGGCAAGACCAACATTGAGACCAGtaggaccagcattgagaccagcaagaccaacattgagaccagcattgagaccggcaaaaccagcattgagaccagcaaaaccagtaTTGAAACAAGCAAGACCAGCATTTAGACCGGCAGGACAAATATTGAGACcggcaaaaccagcattgagaccagcaagaccaacaTTGAGACCAGcaggaccagcattgagaccgGCAAAACCAGCAATGAAGCAAGCTAGACCAGCATTGAAACAAGCAAGACCAGCATTTAGAGCAGCAGGACAAACATTGAGACCGGCAAAACCAGCATTAAGACCAGcaggaccagcattgagaccagcaggaccagcattgagaccggcaaaaccagcattgaagcaagcaagaccagcattgagaccagcaggaccagcattgagaccggcaaaaccagcattgagaccggcaaaaccagcattgagaccggcaaaaccagcattgagaccagcagtACCAGCATTGAggccagcaagaccagcattgagaccggcaaaaccagcattgagaccggcaaaaccagcattgagaccagcagtACCAGCATTGAggccagcaaaaccagcattgagaccggCAAAACCAAAATTGAGACGAGCAAAACCAGCATTTAAACAAGCTAGACCAGCATTTAGACCAGCAGGACCAGTAAGTTATACCAGCATCAAAACGTAccttaccagcatatgctgttttttcagcagggtttgtaAAAGTATTTGTAGTTTAATTCAGTACTTTGTTTGAAAAGCCAAATAATTAAACCTAAAAAATAACTTATACTTTTTTTAGTAATGAGTTTCTTTACTGGTTacttagaaaaatattattatgtaactcgcGTTACTTGTATGCTTATTAGGATATTAATATTCAGTTGTTATGGAAACCCCTGGTTGAAGTCAACAGAAGGACACCCACTCCAAACGCGGAAGCGAATGCTCAGACTTTcgttgaagattaccaaaacactTTTCTGTTAATTAACTTGCACGGGTGAATTTTTCATCTAGGAAATGTGAGCTTGCAAAAATAAACATAGCAATTTTTGATTTAAAGTGGACTTTCAATAAGAAAACATTGAAATAACTTGCTCCTTCCCAGCAGGGGGCGGAAACGACAAAAAAAGCCAAAAGAAGGACAACCTGATGTAGGAAGCAAAGATaactgtacacacatacacacacacacacacactttgcagaGAGCGTtaatatgaatttacacacataACACACATGAACAGCAGAGAaaacacgtgcaaacacacacagccacaAAAAAACCTGACAAAACAACCTGCAAGTGATAATGCACTCGAATATCACCTGACTGACAGACACACTGCAaggttaaacattaaaataaaataaaaataatgataaaaacgtCATgggtaatattaaaatatattttgacacGTTAATACAAACCATAAAAACATCAGACGCGCGAGTCTAGACTTCCTAGATTCACGTTTCCTGACCGCagtcacacacactcacgcacacacacacactcacacacggaAAAACTGAACACGGAG

Function

symbol description
g3bp2 Enables RNA binding activity. Involved in positive regulation of stress granule assembly and protein homooligomerization. Located in cytoplasmic stress granule and cytosol.

GO:

id name namespace
GO:0034063 stress granule assembly biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-070112-1972 Predicted to enable mRNA binding activity. Predicted to act upstream of or within innate immune response and stress granule assembly. Predicted to be located in cytoplasmic stress granule. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol. Orthologous to human G3BP2 (G3BP stress granule assembly factor 2).

Ensembl:

ensembl_id ENSDARG00000074572

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043522 False 2310 mRNA 0.55 13 44078929 44107275
TCONS_00043523 False 942 mRNA 0.51 5 44078936 44093131
TCONS_00043524 True 5603 mRNA 0.45 12 44080382 44110756

Neighbor

gene id symbol gene type direction distance location
XLOC_022002 CABZ01072563.1 coding upstream 3352 44070920 ~ 44075577 (+)
XLOC_022001 txk coding upstream 18474 44049509 ~ 44060455 (+)
XLOC_022000 FO904943.1 coding upstream 71915 43995820 ~ 44007014 (+)
XLOC_021999 corin coding upstream 89509 43950674 ~ 43989420 (+)
XLOC_021998 CU993818.1 coding upstream 139106 43939124 ~ 43939823 (+)
XLOC_022004 tec coding downstream 13382 44124138 ~ 44146690 (+)
XLOC_022005 si:ch73-106g13.1 coding downstream 46926 44157682 ~ 44180795 (+)
XLOC_022006 MEPCE coding downstream 125525 44236281 ~ 44251006 (+)
XLOC_022007 NA coding downstream 153163 44263919 ~ 44266197 (+)
XLOC_022008 dlg4b coding downstream 197240 44307996 ~ 44332790 (+)
XLOC_021987 NA non-coding upstream 446328 43631945 ~ 43632601 (+)
XLOC_021984 BX322612.1 non-coding upstream 743354 43335460 ~ 43335575 (+)
XLOC_021983 CR545469.2 non-coding upstream 783970 43288994 ~ 43294959 (+)
XLOC_022011 NA non-coding downstream 350516 44461272 ~ 44462528 (+)
XLOC_022013 NA non-coding downstream 417118 44527874 ~ 44654032 (+)
XLOC_022015 NA non-coding downstream 456186 44566942 ~ 44577390 (+)
XLOC_022026 CABZ01073261.1 non-coding downstream 1160385 45271141 ~ 45271255 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000129_01837517_01849374 G3BP2 coding CI01000129 null 1837012 ~ 1850055 (+)