XLOC_021983 (CR545469.2)


Basic Information

Item Value
gene id XLOC_021983
gene name CR545469.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 43288994 ~ 43294959 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043494
CGCAAACAAATGTTAACGTTGGTTGAGTAAAAGCGAGTGTGGGTGATCAGTCTCAAGAAGTTGTCTAGAACGGGACTCTAGGATGAACTAACGTACAATTTGCGGTGTTACTTCCTCAGAAAAGCCCGTCCTTTTCAGTCAAGCCGAGGGGCTTCACAGAGAGAACAACAACTTAGCATAACGTCAATATTTCTTCATTTCGTGTTCATCATCAGCATGTGGGCTTTCATACTGTTTTTCATCTGCATGGAAGTGCATGGAAAGGCTGATGACGTCGAAACCCTGATTAACATAAAGGAGGGAGATATTCTCACTCTGCTTCCAGAACTCGATGATCTTCACGAAACCGTTCAGATATTGTGGACGTTTGAAAATGGCGGATTAAAAACCCGCCTTGCACAGATGCATCAAGGGAATATTTACACTCATTATGACGTACAATTCACTGGCAGAGTAAATCTAGACAGGGAGACGGGGATTTTAACTCTATCAGACATCAAGATCAATGAATCTGGACTGTATAAAGCATTAATCATCACCAATAAACACATGCTAGGACGAAGATATAAAGTTATCGTTTATGGTAAGTTACAGAAACTATTAACAAATAACATGTAATCATAATCACTGCTGTATTGGTCTTTTAAAAGTTTCTTCTTGTCCAAAGCATCAGTCTCTTTACCTGCCATTAGGAGAAGGTCATCTGTGGACCATTCAACAGGTATGACTTTATGATTTGTATACtgtaataattaatacaattagaaaagtaaagttcgaaggcaaactttatggtggcttgagaaagcctcgtctgaaagtttgaagtagtttttaattagtttaaaacagtcaaaactaCATATAGGTTAGCATGTTTAGCTGATAGggggttctgagtggttactaagtggttgctaggatgttctgattcgttgctaggctgttgctaaggtgttgctaggtcattgctaaggtgttgctagagtgttctgagtgtttgctaggtggttgctaaagtgtttctaggtggttgtaaggtgttgctaggcggttgccaAGGTGTTTTATAtcgttgctaaggtattgctaggtggttgctagggtgttctgagtggttgctaaggtgttgctagggtgttttgattgGTTGCTAAGGGGCTAGGTCATTGCTaagttgttctgagtggttgttaggtggttgctagagtgttgctaggtggttgctaaagtgttgctatgtggttgctaaggcattgctaggtggttgctaaggtgttgctaggtggttgctaatgtcttgctagggtgttttgattgGTAGCTAGgtgtttgctaaggtgttgctaggtggttgctaaggtgttctggg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117576

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043494 True 1372 lncRNA 0.41 4 43288994 43294959

Neighbor

gene id symbol gene type direction distance location
XLOC_021982 tgm2a coding upstream 16869 43255328 ~ 43272125 (+)
XLOC_021981 si:dkey-65j6.2 coding upstream 36598 43177290 ~ 43252396 (+)
XLOC_021980 NA coding upstream 225403 43060401 ~ 43063591 (+)
XLOC_021979 myl9a coding upstream 465638 42810055 ~ 42823356 (+)
XLOC_021978 FO904880.1 coding upstream 567844 42690904 ~ 42721150 (+)
XLOC_021984 BX322612.1 coding downstream 40501 43335460 ~ 43335575 (+)
XLOC_021985 tti1 coding downstream 129559 43424518 ~ 43448409 (+)
XLOC_021986 znf341 coding downstream 194223 43489182 ~ 43519742 (+)
XLOC_021987 NA coding downstream 336986 43631945 ~ 43632601 (+)
XLOC_021988 slc10a7 coding downstream 344023 43638982 ~ 43653012 (+)
XLOC_021976 CT997819.5 non-coding upstream 645868 42626534 ~ 42643126 (+)
XLOC_021975 CT997819.4 non-coding upstream 683935 42604944 ~ 42605059 (+)
XLOC_021974 NA non-coding upstream 700452 42585868 ~ 42588542 (+)
XLOC_021973 CT997819.2 non-coding upstream 712115 42524992 ~ 42576879 (+)
XLOC_021998 CU993818.1 non-coding downstream 644165 43939124 ~ 43939823 (+)
XLOC_022002 CABZ01072563.1 non-coding downstream 775961 44070920 ~ 44075577 (+)
XLOC_022007 NA non-coding downstream 968960 44263919 ~ 44266197 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000193_00074853_00078832 NA coding CI01000193 null 74449 ~ 78947 (-)