XLOC_021998 (CU993818.1)


Basic Information

Item Value
gene id XLOC_021998
gene name CU993818.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 43939124 ~ 43939823 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043516
GCGGGTTGCGCGCAGACACTCGTATTCAGAAATCCGACACGTACGAGTAAAACAAACTCTAAATATAAGagtaataagcagaataacataCAACAGACCCATAAATAGCTAACATAGAATAAATTTAGATCCACTTGTGATGGAATCTGCTGCTGTGAACTTTAGattctCCTGCACAAGCTGGAAACTCTGAAGTGAAATACCTGTGTAAAAATAGCCCGCGGGAGCGCGTCTGCTCGCCGTGTCTGATGGTCCGGATCCTCCGTGATCTGCTGCCGTTAACCGGAGgtgtgtgtgtgtgtatcggaTGAGCTGATGATGGGTGAAGCGTTCACACACACTCAGCGCTGCGGGAAACATCTGCGACTGCTGCTCTTCATCCTgctgc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095873

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043516 True 388 processed_transcript 0.48 3 43939124 43939823

Neighbor

gene id symbol gene type direction distance location
XLOC_021997 nfxl1 coding upstream 10083 43870886 ~ 43929041 (+)
XLOC_021996 cnga1b coding upstream 72770 43849190 ~ 43866354 (+)
XLOC_021995 si:ch211-149b19.4 coding upstream 95334 43834376 ~ 43843790 (+)
XLOC_021994 PPM1K coding upstream 107929 43809484 ~ 43831195 (+)
XLOC_021993 si:ch211-149b19.2 coding upstream 136718 43794687 ~ 43802406 (+)
XLOC_021999 corin coding downstream 10851 43950674 ~ 43989420 (+)
XLOC_022000 FO904943.1 coding downstream 55997 43995820 ~ 44007014 (+)
XLOC_022001 txk coding downstream 109686 44049509 ~ 44060455 (+)
XLOC_022002 CABZ01072563.1 coding downstream 131097 44070920 ~ 44075577 (+)
XLOC_022003 G3BP2 coding downstream 139106 44078929 ~ 44110756 (+)
XLOC_021987 NA non-coding upstream 306523 43631945 ~ 43632601 (+)
XLOC_021984 BX322612.1 non-coding upstream 603549 43335460 ~ 43335575 (+)
XLOC_021983 CR545469.2 non-coding upstream 644165 43288994 ~ 43294959 (+)
XLOC_021980 NA non-coding upstream 875533 43060401 ~ 43063591 (+)
XLOC_021976 CT997819.5 non-coding upstream 1295998 42626534 ~ 42643126 (+)
XLOC_022007 NA non-coding downstream 324096 44263919 ~ 44266197 (+)
XLOC_022011 NA non-coding downstream 521449 44461272 ~ 44462528 (+)
XLOC_022013 NA non-coding downstream 588051 44527874 ~ 44654032 (+)
XLOC_022015 NA non-coding downstream 627119 44566942 ~ 44577390 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G203571 NA non-coding NC_053131.1 CM020928.1 17558814 ~ 17559183 (+)
tiger barb (Puntius tetrazona) G185778 NA non-coding NW_025048217.1 JAEQBD010000562.1 457487 ~ 457996 (+)