XLOC_021996 (cnga1b)


Basic Information

Item Value
gene id XLOC_021996
gene name cnga1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 43849190 ~ 43866354 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043512
AATCCCAGATCCTACTGTGCCTGTCTGCAATCCTCTGGAGCTCCGTGTGTGTTTGGGAATACCGCTTAAACCTGAGGCTGATCCGTGTTTTGGGCAAATGTTCGGTGTTTCGGTTTTCGGAGTGTGTGTGAGGGAGAATGCCTGCATGTTTTCGCTGGCGTACCTGTGAAGATGTCAGGTGTGTGAAAGCGACACAAGTGCTCTGCAACGGGCGGGtgtcctgaccaatcagctgcaTGTCTGCACGAGTGAGGCCTTTGGACCCGCCCAGATTTCTGGTGGAGGGGATGGAGCAGGTTACCATGGAGGACGTTATAGAAAATAAGCGTCCTGATGCTGGAGCTCTCTtcaacaacaccaacaacagcAATAACAATGAAGAGGAggacaaaaagaagaaaaagaaagaaaaaaaggagaaaaaggaGAAAAAggagaagaaagaaaagaaggagaagaaggaaaagaagaaagaacaagaagagaaagagaaggagaaagaaaaagagaaggagaaagaaaaggagaaggaaaaagagaaagagaagaaagAACCGCTGAAGGAGATCGAGGTGGTGGATCCGGCTGGAAACATGTACTACAACTGGCTGTTCGTGATCACGTGTCCTGTGATGTACAACTGGATATTCATCATAGCAAGAGCTTGCTTCGAGGAGCTGCAGGGGGATTATTTGATCCTCTGGTTCTTCCTGGATTACTTATCGGATGCGGTGTACCTGCTGGACATGGTGTTCAGGACCAGGACAGGATATCTGGAGCAGGGTCTTCTAGTGAAAGATCAGAAAAAGCTTCGCGATCGCTACACAGACAGCTTGCAGTTTAGACTGGATCTAGCCTCAATGGTTCCCACAGATATTTTCTACCTGTACTTCGGCATGAACTACCCAGAGATTCGCATGAACAAGCTCCTGAGGATCAATCGACTGTTTGAGTTTTTCCAGCGCACCGAAACGCGGACTAACTTTCCCAACGTCTTCCGAATCTCCAACCTCGTCATGTACATCGTGATCATCATCCACTGGAACGCCTGCATGTATTACTCTTTCTCCAAAGCCATCGGTTTTGGATCAGACGCTTTCGTGTACCCGGACCCTTCAGATCCTGAGTTTGGCCGATTGGTACGTAAATATGCCTACAGCATGTACTGGTCCACCCTGACGCTCACTACCATCGGCGAAACACCGCCGCCCGTCGAAAACTCTGAGTACTTCTTCGTAGTCACCGACTTTCTAGTCGGCGTGTTGATTTTCGCAACAATCGTCGGTAACGTCGGCTCAATGATCACAAATGCCAACGCAGCACGAGCCGATTTCCAAGCTCGCATCGATGCTATTAAACAATACATGAGCTTTCGGAAAGTCACCAAGGATTTGGAGAAACGGGTTATTAAATGGTTTGATTATTTGTGGACCAATAAAAAGGCGGTCGATGAGAGAGAAGTACTGAAGTATCTTCCCGACAAGCTGAGGGCGGAGATAGCCATAAACGTCCATCTGGATACGCTAAAAAAAGTGCGTATCTTTGCGGACTGTGAAGCCGGGCTTTTGGTGGAGCTGGTGTTAAAGCTGCAGCCGCAGGTTTACAGCCCTGGAGACTATATATGCAAAAAGGGCGACATCGGGCGCGAGATGTACATCATTAAAGAGGGTAAACTGGCTGTGGTGGCGGATGACGGGATTACGCAGTTCGTGGTGCTCAGTGATGGGAGTTATTTCGGAGAGATCAGCATTCTCAATATTAAGGGCAGCAGGGCGGGGAATCGCAGAACCGCCAACATACGCAGTATTGGATATTCGGATCTGTTCTGTCTTTCCAAAGACGACCTAATGGAGGCGCTGACTGAATATCCGGATGCCAAGGCCATGCTGGAGGAGAAGGGGCGACAGATCCTTATGAAGGATAATCTCCTGGATTTGGAGTTGGCCAAGCAGGGTCCCGATCCCAAAGACATGGAGGAGAAGGTGCAGAAGATCGGCGGTGTGCTGGAGGACCTGCAGACACGCTTCGCCCGTCTTTTAGCTGAACAAGAAGCTGCTCAGGGAAAACTGAAGAAGCGCGTCACTAAGCTGGAGAAGAAGATGACCAGCGAAACTCTGATGGAGCCACCGCCGGAAACTGCAGACAAGACTGACTAGACTGAGCCCATGAAACCCATTAGTTTTCCCACACTACAATAATACTACagtcatttacagtaaatactatagtgttttttaatcATACTATAGTAGAGTggattatactgtatatatcacaGGATCTACAACTCGTTAATGTTCAGGAATGCTGCAGcggataaactgtaaaaaaacacaGTACTATACTTcaggttttactacagtaaactgtggtgtattgtataTTATACACTATAGTTGTAGAAAAGTAcagcactgggtcatttgtttatattactatagttgtt
>TCONS_00043513
ATGAGTTCAAATGAAACCATTTCTTATAAATGTCTTACTTtaattttttcccatttttttgACCCTATTGGAAATCTACagattttaaatgcattacaaggtttttttttattttttattatcttttatcttTCTTTATATCCACAGGGAggacaaaaagaagaaaaagaaagaaaaaaaggagaaaaaggaTGTTTTTGTTACTCCAGGAAAAAggagaagaaagaaaagaaggagaagaaggaaaagaagaaagaacaagaagagaaagagaaggagaaagaaaaagagaaggagaaagaaaaggagaaggaaaaagagaaagagaagaaagAACCGCTGAAGGAGATCGAGGTGGTGGATCCGGCTGGAAACATGTACTACAACTGGCTGTTCGTGATCACGTGTCCTGTGATGTACAACTGGATATTCATCATAGCAAGGTCTTGCTTCGAGGAGCTGCAGGGGGATTATTTGATCCTCTGGTTCTTCCTGGATTACTTATCGGATGCGGTGTACCTGCTGGACATGGTGTTCAGGACCAGGACAGGATATCTGGAGCAGGGTCTTCTAGTGAAAGATCAGAAAAAGCTTCGCGATCGCTACACAGACAGCTTGCAGTTTAGACTGGATCTAGCCTCAATGGTTCCCACAGATATTTTCTACCTGTACTTCGGCATGAACTACCCAGAGATTCGCATGAACAAGCTCCTGAGGATCAATCGACTGTTTGAGTTTTTCCAGCGCACCGAAACGCGGACTAACTTTCCCAACGTCTTCCGAATCTCCAACCTCGTCATGTACATCGTGATCATCATCCACTGGAACGCCTGCATGTATTACTCTTTCTCCAAAGCCATCGGTTTTGGATCAGACGCTTTCGTGTACCCGGACCCTTCAGATCCTGAGTTTGGCCGATTGGTACGTAAATATGCCTACAGCATGTACTGGTCCACCCTGACGCTCACTACCATCGGCGAAACACCGCCGCCCGTCGAAAACTCTGAGTACTTCTTCGTAGTCACCGACTTTCTAGTCGGCGTGTTGATTTTCGCAACAATCGTCGGTAACGTCGGCTCAATGATCACAAATGCCAACGCAGCACGAGCCGATTTCCAAGCTCGCATCGATGCTATTAAACAATACATGAGCTTTCGGAAAGTCACCAAGGATTTGGAGAAACGGGTTATTAAATGGTTTGATTATTTGTGGACCAATAAAAAGGCGGTCGATGAGAGAGAAGTACTGAAGTATCTTCCCGACAAGCTGAGGGCGGAGATAGCCATAAACGTCCATCTGGATACGCTAAAAAAAGTGCGTATCTTTGCGGACTGTGAAGCCGGGCTTTTGGTGGAGCTGGTGTTAAAGCTGCAGCCGCAGGTTTACAGCCCTGGAGACTATATATGCAAAAAGGGCGACATCGGGCGCGAGATGTACATCATTAAAGAGGGTAAACTGGCTGTGGTGGCGGATGACGGGATTACGCAGTTCGTGGTGCTCAGTGATGGGAGTTATTTCGGAGAGATCAGCATTCTCAATATTAAGGGCAGCAGGGCGGGGAATCGCAGAACCGCCAACATACGCAGTATTGGATATTCGGATCTGTTCTGTCTTTCCAAAGACGACCTAATGGAGGCGCTGACTGAATATCCGGATGCCAAGGCCATGCTGGAGGAGAAGGGGCGACAGATCCTTATGAAGGATAATCTCCTGGATTTGGAGTTGGCCAAGCAGGGTCCCGATCCCAAAGACATGGAGGAGAAGGTGCAGAAGATCGGCGGTGTGCTGGAGGACCTGCAGACACGCTTCGCCCGTCTTTTAGCTGAACAAGAAGCTGCTCAGGGAAAACTGAAGAAGCGCGTCACTAAGCTGGAGAAGAAGATGACCAGCGAAACTCTGATGGAGCCACCGCCGGAAACTGCAGACAAGACTGACTAG

Function

symbol description
cnga1b Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to act upstream of or within cation transmembrane transport and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 49. Orthologous to human CNGA1 (cyclic nucleotide gated channel subunit alpha 1).

GO:

id name namespace
GO:0098655 cation transmembrane transport biological_process
GO:0007601 visual perception biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005221 intracellular cyclic nucleotide activated cation channel activity molecular_function
GO:0005222 intracellular cAMP-activated cation channel activity molecular_function
GO:0005223 intracellular cGMP-activated cation channel activity molecular_function
GO:0030553 cGMP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-39 Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to act upstream of or within cation transmembrane transport and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 49. Orthologous to human CNGA1 (cyclic nucleotide gated channel subunit alpha 1).

Ensembl:

ensembl_id ENSDARG00000012125

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043512 False 2446 mRNA 0.47 9 43849190 43866354
TCONS_00043513 True 1938 mRNA 0.46 6 43855618 43866064

Neighbor

gene id symbol gene type direction distance location
XLOC_021995 si:ch211-149b19.4 coding upstream 5400 43834376 ~ 43843790 (+)
XLOC_021994 PPM1K coding upstream 17995 43809484 ~ 43831195 (+)
XLOC_021993 si:ch211-149b19.2 coding upstream 46784 43794687 ~ 43802406 (+)
XLOC_021992 rnf150b coding upstream 62043 43770149 ~ 43787147 (+)
XLOC_021991 si:ch73-285p12.4 coding upstream 91801 43750646 ~ 43757389 (+)
XLOC_021997 nfxl1 coding downstream 4532 43870886 ~ 43929041 (+)
XLOC_021998 CU993818.1 coding downstream 72770 43939124 ~ 43939823 (+)
XLOC_021999 corin coding downstream 84320 43950674 ~ 43989420 (+)
XLOC_022000 FO904943.1 coding downstream 129466 43995820 ~ 44007014 (+)
XLOC_022001 txk coding downstream 183155 44049509 ~ 44060455 (+)
XLOC_021987 NA non-coding upstream 216589 43631945 ~ 43632601 (+)
XLOC_021984 BX322612.1 non-coding upstream 513615 43335460 ~ 43335575 (+)
XLOC_021983 CR545469.2 non-coding upstream 554231 43288994 ~ 43294959 (+)
XLOC_021980 NA non-coding upstream 785599 43060401 ~ 43063591 (+)
XLOC_021976 CT997819.5 non-coding upstream 1206064 42626534 ~ 42643126 (+)
XLOC_022002 CABZ01072563.1 non-coding downstream 204566 44070920 ~ 44075577 (+)
XLOC_022007 NA non-coding downstream 397565 44263919 ~ 44266197 (+)
XLOC_022011 NA non-coding downstream 594918 44461272 ~ 44462528 (+)
XLOC_022013 NA non-coding downstream 661520 44527874 ~ 44654032 (+)

Expression


Co-expression Network