XLOC_021992 (rnf150b)


Basic Information

Item Value
gene id XLOC_021992
gene name rnf150b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 43770149 ~ 43787147 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043506
GTTTTTATCTCCAACAGCTGAAGGCCGAAAACATCCGACACCATGGCTCCGTCGCGACGCTCCTGCTCGCGTTTTTACCGACCCACACGCTAAACAGGCGGTAGGGTTTATTAATCAAAGTATTCACTCTATTACCTGTAGTTTTTACAAACGGTTTACTCATGAGTGACTGCTGCCGCTCCGCGTAACGCGCACAAAGCGGAGATTATGGAGTGAACGCGCGTCGAGCGGCCGTTAAACCgtcataacaataacaataaacccgTTATGGCGCTGTCTGTGATTCAGGCGTGTCGGAGTCTGGCTCTGTCCACCTGGTTGCTGTCTTTCTGCTTCGTTCATCTGCTGTGTTTGGACTTTACGGTGGCCGAGAAGGAGGAATGGTACACGGCGTTCGTTAACATCACATACGTGGATCCGGACACGGCCGAGGTCCGGACCGAGAAAACGGAGTGCGGGCGATACGGGGAGCATTCACTCAAACGGGAGGCCAGAGGCGTGCTTGCGATGCCCGCCGCACCGCACGACAGACATGCATGCGACCCGAGCGGCAGATTCACGCCGCGCGCACACGGTGCCTGGATCGCGCTCATCAGCCGCGGAAACTGCACGTACAAGGATAAAATCAGACACGCCGTGGGACACAACGCGTCAGCCGTGGTCATATTCAATGTGGGCTCCTCTAACCCCAATGAGACCATCACCATGCCGCATCAAGGCATCAGTGACGTGGTGGCCATCATGATCCCGGAGCCCAAGGGCCGAGAGCTGGTGCTGCTGATGGAGAGGAACATCACGGTCCACATGCACATCACCATCGGCACACGAAACCTGCAGAAGTACGTCAGCCGCACATCGGTGGTGTTCGTCTCCATCTCCTTCATCATCCTCATGATCATCTCGCTGGCCTGGCTCGTCTTCTACTACATCCAGAGGTTCAGATACGCCAACGCCAGAGATCGCAACCAGAGGAGGCTTGGAGACGCTGCCAAAAAGGCCATCAGCCAATTACAAGTGCGCACCATCAGGAAAGGAGACCAGGAAACGGAGAGTGACTTTGATAACTGTGCTGTTTGTATCGAGGGCTACAAACCTAATGATGTTGTCCGAATTTTGCCCTGCagGCATCTGTTTCATAAATGCTGCGTGGACCCGTGGCTGGTGGACCACCGGACGTGTCCCATGTGTAAAATGAACATCCTCAAAGCCCTCGGCCTCACGTCGAGTGCCGAGTGTCTGAACGAGCTCCCCTTGGACTATGAGCTGGCCGTTGGGGGCGTGGCTCTCAACGCAATGGTGATGAGTGATGATGTCATGGCAGGGGATGTGGGCGGTGCCCGTGATCCCGGGGTCAGGATGGGGGGTCTCCCTCAGGTCCTCCTCGACTCAGAGCCTCTGTCGCAGGACACGATGCCAACTGAacagaGTGAGTTACAGCCAATAGCCAGTGGGAGTTCAGATGTCTCCCTGACGACAGGGGCAGGGCATTCAGATATTGACACGCCCACTGATGACCCAAAGTGCTGATCTGGCCACGCCCATAGATCAATAGTTTGTCTGAGCGCAGCGACGGGCTGGAAAGAGCTTTAACCTCAGTGGAAGTCTGGCCGATGTCTCGCGGTTTAACAAACACACTGCCTGTTACTTtcattcctctctctctctctctctctctctctttctctgaaaAGCAGGGTGAACTCTCTTCTTTCTCCCCTTAAGTGTGCACACTACAGTACACACTACAGTTACATACTTGAGCTAAAGCACTTGGCGGACGTTCGACAATCAGATCATATCTCTATCTCTTTCCTACCGTCGCAGTGTTGTTCGCTGCCTGTTTTACCACTGTCTGTGATCCCGGCGCAgcgcaaaacaaaaaacaaggtgtTAAAGACTATTTTGAATCCCAAAAGAtgtggtttatttttttatagaggAGCGTTTTGATGTGCTTGAGTTCTGCagtattaaatacaaacaaaaaaagagagagagagactgtgtcaGTATTTAGACGCCTTCCTTTTGGAGATGTTTTTTTTGTGGGATTTGGCCCTCACCAAAGACGCCTGGACGGACGTTGTGCGGGACAAAACTGTGGGACTTTCTAGGAAGTGCTCTTTGGATTGTGTGGAGCAGGTCATGTGATGTTTGCTGTGCATGCCACATGCCCGATCCACCTGTGCTTTCAGTGGAGTTCCttcaaagggatagtttactctcaaaacaacattatttacTCAGCCTTGTGTCATTCAGATccctttatttaaaacaaaaaaaggtcaACACACTGTAAATAGCGATTAGGTATTTTacttactttaataaagtgagtaaatctgttgcttttaaagcggttagttgactttactttaataaagtgagtaaatctgttgcttttaaagcgattagttgactttactttaataaagtaagtaaacctgttgctttaaaagtgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaatctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaaacggttagttgactttactttaataaagtgagtaaacctgttgctttaaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtaagtaaacctgttgctttaaaagtgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgaatttactttaataaagtgagtaaacctgttgctttaaaagtgattagttgactttactttaaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaatctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaatctgttgcttttaaagcgattagttgactttactttaataaagtaagtaaacctgttgctttaaaagtgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaatctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctattgcttttaaaacggttagttgactttactttaataaagtgagtaaacctgttgctttaaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtaagtaaacctgttgctttaaaagcgattagttgactttactttaataaagtgagtaaacctgttgctttaaaagcgattagttgactttactttaataaagtgagtaaacctgttgctttaaaagcgattagttgactttactttaataaagtgagtaaacatgttgctttaaaagcgattagttgactttactttaataaagtgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgctttaaaagcgattagttgactttactttaataaagtgagtaaacctgttgctttaaaagcgattagttgactttactttaataaagtgagtaaatctgttgcttttaaagcggttagttgactttactttaataaagtgagtaaacctgttgctttaaaagcgattagttgactttactttaataaagtgagtaaacctgttgctttaaaagcgattagttgactttactttaataaagtgagtaaacctgttgctttaaaagcgattagttgactttactttaataaagtgagtaaacctgttgctttaaaagcgattagttgactttactttaataaagcgagtaaacctgttgcttttaaagcgattagttgactttactttaataaagtgagtaaacctgttgc

Function

symbol description
rnf150b Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human RNF150 (ring finger protein 150).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-470 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human RNF150 (ring finger protein 150).

Ensembl:

ensembl_id ENSDARG00000009524

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043506 True 4240 mRNA 0.41 7 43770149 43787147

Neighbor

gene id symbol gene type direction distance location
XLOC_021991 si:ch73-285p12.4 coding upstream 12760 43750646 ~ 43757389 (+)
XLOC_021990 anapc10 coding upstream 24024 43718115 ~ 43746125 (+)
XLOC_021989 otud4 coding upstream 78028 43668756 ~ 43692121 (+)
XLOC_021988 slc10a7 coding upstream 117137 43638982 ~ 43653012 (+)
XLOC_021987 NA coding upstream 137548 43631945 ~ 43632601 (+)
XLOC_021993 si:ch211-149b19.2 coding downstream 7540 43794687 ~ 43802406 (+)
XLOC_021994 PPM1K coding downstream 22337 43809484 ~ 43831195 (+)
XLOC_021995 si:ch211-149b19.4 coding downstream 47229 43834376 ~ 43843790 (+)
XLOC_021996 cnga1b coding downstream 62043 43849190 ~ 43866354 (+)
XLOC_021997 nfxl1 coding downstream 83739 43870886 ~ 43929041 (+)
XLOC_021984 BX322612.1 non-coding upstream 434574 43335460 ~ 43335575 (+)
XLOC_021983 CR545469.2 non-coding upstream 475190 43288994 ~ 43294959 (+)
XLOC_021980 NA non-coding upstream 706558 43060401 ~ 43063591 (+)
XLOC_021976 CT997819.5 non-coding upstream 1127023 42626534 ~ 42643126 (+)
XLOC_021998 CU993818.1 non-coding downstream 151977 43939124 ~ 43939823 (+)
XLOC_022002 CABZ01072563.1 non-coding downstream 283773 44070920 ~ 44075577 (+)
XLOC_022007 NA non-coding downstream 476772 44263919 ~ 44266197 (+)
XLOC_022011 NA non-coding downstream 674125 44461272 ~ 44462528 (+)
XLOC_022013 NA non-coding downstream 740727 44527874 ~ 44654032 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000129_00292769_00300871 RNF150A coding CI01000129 null 291218 ~ 301693 (+)
bowfin (Amia calva) G100261 rnf150,LOC107703843,LOC107746087 non-coding CM030132.1 CM030132.1 19801976 ~ 19802225 (-)