RNA id: TCONS_00043494


Basic Information

Item Value
RNA id TCONS_00043494
length 1372
lncRNA type lincRNA
GC content 0.41
exon number 4
gene id XLOC_021983
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 43288994 ~ 43294959 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAAACAAATGTTAACGTTGGTTGAGTAAAAGCGAGTGTGGGTGATCAGTCTCAAGAAGTTGTCTAGAACGGGACTCTAGGATGAACTAACGTACAATTTGCGGTGTTACTTCCTCAGAAAAGCCCGTCCTTTTCAGTCAAGCCGAGGGGCTTCACAGAGAGAACAACAACTTAGCATAACGTCAATATTTCTTCATTTCGTGTTCATCATCAGCATGTGGGCTTTCATACTGTTTTTCATCTGCATGGAAGTGCATGGAAAGGCTGATGACGTCGAAACCCTGATTAACATAAAGGAGGGAGATATTCTCACTCTGCTTCCAGAACTCGATGATCTTCACGAAACCGTTCAGATATTGTGGACGTTTGAAAATGGCGGATTAAAAACCCGCCTTGCACAGATGCATCAAGGGAATATTTACACTCATTATGACGTACAATTCACTGGCAGAGTAAATCTAGACAGGGAGACGGGGATTTTAACTCTATCAGACATCAAGATCAATGAATCTGGACTGTATAAAGCATTAATCATCACCAATAAACACATGCTAGGACGAAGATATAAAGTTATCGTTTATGGTAAGTTACAGAAACTATTAACAAATAACATGTAATCATAATCACTGCTGTATTGGTCTTTTAAAAGTTTCTTCTTGTCCAAAGCATCAGTCTCTTTACCTGCCATTAGGAGAAGGTCATCTGTGGACCATTCAACAGGTATGACTTTATGATTTGTATACtgtaataattaatacaattagaaaagtaaagttcgaaggcaaactttatggtggcttgagaaagcctcgtctgaaagtttgaagtagtttttaattagtttaaaacagtcaaaactaCATATAGGTTAGCATGTTTAGCTGATAGggggttctgagtggttactaagtggttgctaggatgttctgattcgttgctaggctgttgctaaggtgttgctaggtcattgctaaggtgttgctagagtgttctgagtgtttgctaggtggttgctaaagtgtttctaggtggttgtaaggtgttgctaggcggttgccaAGGTGTTTTATAtcgttgctaaggtattgctaggtggttgctagggtgttctgagtggttgctaaggtgttgctagggtgttttgattgGTTGCTAAGGGGCTAGGTCATTGCTaagttgttctgagtggttgttaggtggttgctagagtgttgctaggtggttgctaaagtgttgctatgtggttgctaaggcattgctaggtggttgctaaggtgttgctaggtggttgctaatgtcttgctagggtgttttgattgGTAGCTAGgtgtttgctaaggtgttgctaggtggttgctaaggtgttctggg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194526

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043493 lncRNA upstream 26069 43258775 ~ 43262925 (+) True XLOC_021982
TCONS_00043492 lncRNA upstream 27300 43255742 ~ 43261694 (+) False XLOC_021982
TCONS_00044702 lncRNA upstream 41873 43244091 ~ 43247121 (+) True XLOC_021981
TCONS_00044909 lncRNA upstream 225403 43060401 ~ 43063591 (+) True XLOC_021980
TCONS_00043479 lncRNA upstream 645868 42626534 ~ 42643126 (+) True XLOC_021976
TCONS_00044703 lncRNA downstream 336986 43631945 ~ 43632601 (+) True XLOC_021987
TCONS_00044704 lncRNA downstream 431275 43726234 ~ 43746125 (+) True XLOC_021990
TCONS_00043521 lncRNA downstream 775961 44070920 ~ 44075577 (+) True XLOC_022002
TCONS_00044910 lncRNA downstream 968960 44263919 ~ 44266197 (+) False XLOC_022007
TCONS_00044911 lncRNA downstream 1166313 44461272 ~ 44462528 (+) False XLOC_022011
TCONS_00043491 mRNA upstream 16869 43255328 ~ 43272125 (+) False XLOC_021982
TCONS_00043487 mRNA upstream 36598 43177290 ~ 43252396 (+) False XLOC_021981
TCONS_00043496 mRNA downstream 129559 43424518 ~ 43448409 (+) True XLOC_021985
TCONS_00043497 mRNA downstream 194223 43489182 ~ 43519742 (+) False XLOC_021986
TCONS_00043498 mRNA downstream 198449 43493408 ~ 43519558 (+) True XLOC_021986
TCONS_00043499 mRNA downstream 344023 43638982 ~ 43653012 (+) True XLOC_021988
TCONS_00043500 mRNA downstream 373797 43668756 ~ 43692121 (+) False XLOC_021989
TCONS_00043478 other upstream 683935 42604944 ~ 42605059 (+) True XLOC_021975
TCONS_00043477 other upstream 743169 42524992 ~ 42545825 (+) False XLOC_021973
TCONS_00043476 other upstream 786304 42502565 ~ 42502690 (+) True XLOC_021972
TCONS_00043464 other upstream 958506 42316065 ~ 42330488 (+) True XLOC_021964
TCONS_00043458 other upstream 1097641 42191239 ~ 42191353 (+) True XLOC_021959
TCONS_00043495 other downstream 40501 43335460 ~ 43335575 (+) True XLOC_021984
TCONS_00043509 other downstream 514525 43809484 ~ 43828780 (+) False XLOC_021994
TCONS_00043516 other downstream 644165 43939124 ~ 43939823 (+) True XLOC_021998
TCONS_00043539 other downstream 1251384 44546343 ~ 44550528 (+) False XLOC_022014
TCONS_00043544 other downstream 1304161 44599120 ~ 44604194 (+) False XLOC_022016

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000193_00074853_00078832.mRNA True 1194 mRNA 0.37 4 CI01000193 74449 ~ 78947 (-)