Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_022099 |
| gene name | rnf114 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 3503596 ~ 3511630 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| rnf114 | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within cell differentiation and spermatogenesis. Predicted to be located in cytoplasm and nucleus. Is expressed in olfactory placode; peripheral olfactory organ; and pronephric duct. Human ortholog(s) of this gene implicated in psoriasis 12. Orthologous to human RNF114 (ring finger protein 114). |
| id | name | namespace |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0000209 | protein polyubiquitination | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ko04121 | Ubiquitin system |
| id | description |
|---|---|
| ZDB-GENE-040813-1 | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within cell differentiation and spermatogenesis. Predicted to be located in cytoplasm and nucleus. Is expressed in olfactory placode; peripheral olfactory organ; and pronephric duct. Human ortholog(s) of this gene implicated in psoriasis 12. Orthologous to human RNF114 (ring finger protein 114). |
| ensembl_id | ENSDARG00000009886 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00043657 | True | 1262 | mRNA | 0.42 | 6 | 3503596 | 3511630 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_022098 | NA | coding | downstream | 52217 | 3450998 ~ 3451379 (-) |
| XLOC_022097 | mafba | coding | downstream | 94456 | 3405665 ~ 3409140 (-) |
| XLOC_022096 | AL954726.1 | coding | downstream | 447500 | 3055981 ~ 3056096 (-) |
| XLOC_022095 | NA | coding | downstream | 511489 | 2960218 ~ 2992107 (-) |
| XLOC_022094 | zhx3 | coding | downstream | 602429 | 2872855 ~ 2901167 (-) |
| XLOC_022100 | pacsin1a | coding | upstream | 141756 | 3653386 ~ 3703569 (-) |
| XLOC_022101 | nudt3a | coding | upstream | 199316 | 3710946 ~ 3721444 (-) |
| XLOC_022102 | NA | coding | upstream | 216460 | 3728090 ~ 3730606 (-) |
| XLOC_022103 | hmga1a | coding | upstream | 239821 | 3751451 ~ 3759692 (-) |
| XLOC_022104 | opn7b | coding | upstream | 266025 | 3777655 ~ 3802071 (-) |
| XLOC_022093 | NA | non-coding | downstream | 659342 | 2842399 ~ 2844254 (-) |
| XLOC_022092 | NA | non-coding | downstream | 774587 | 2728104 ~ 2729009 (-) |
| XLOC_022117 | FO904870.1 | non-coding | upstream | 1608102 | 5119732 ~ 5126166 (-) |
| XLOC_022118 | NA | non-coding | upstream | 1679147 | 5190777 ~ 5199754 (-) |
| XLOC_022119 | CR936540.1 | non-coding | upstream | 1699391 | 5211021 ~ 5365345 (-) |
| XLOC_022120 | dre-let-7a-5 | non-coding | upstream | 1919566 | 5431196 ~ 5431319 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
