RNA id: TCONS_00043657


Basic Information

Item Value
RNA id TCONS_00043657
length 1262
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_022099
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 3503596 ~ 3511630 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACTATTTTCCTTTAATTTATGATGATGTAAATATCCTTATgtatttcttttaaaacatttttatttatagttttcattttttttttctttatactgTGACTAGATTTTGCATTGcccatcaataataaaaaaagtaacgTCAAAAAAACTTCTACGTTCTTATTTTACAGTCTGATTCAACCTCCAATCGAGTCattttcacattcattcattcggtcgGTCATTTAAAAGAGCCGGTTCAAATGACTCGTTTATGCATCGGAGAGCACTAGCGAGATCTCGCTTATAACTACGCACGTAGAAGACAACACAGCCACAACAGATGTAGCCTActatatattgcatttatttgttaGCAAACGGCTATTTTTATTTGTCGTACGTCTAATAAGAGCTGTAATGTTGTTTCTCGTTCATGTGCATCAGGAGATCAGCTGAGTTGTTGCTCCTCCCCTCACAAAAGTGAATCTCACTGGAGTTCAAGAACACGGAACACAGCGCAGCAGAAATGGCCATGCTCAAAATAGACCCGCAAACCGACGTAAACGATGCTGAAGACGACGACTTCGTGTGTCCCGTGTGTTTGGAGATATTCGTCCGGCCCATGACCACGCAGTGCGGACATACGTTCTGTAACGACTGCCTTCAGGAGTGTCTGCGGCCCCAAAGCCCAGTGTGTGCCGTCTGCAGGACTGATCTGCGCAAGTGGGCTAAAGATGACCATTTACAAGACCTTATGAAGAGATCAATCGGAAAGTGCAAAGGCTGTAAAAATGAgGTTCTTATTTCTGACATGAGAAGCCACACAGGAAATTGCTTCAAATATCAAAACTACATCCAGGAGGGTATGAAGTCCATTTCAAAAGACCAGCCCTCCATTGTCAGTTCAGTGCCGAACCGCTCCACGTTCACCTGCCCCTACTGTAAGAAGCAGAACTTTGACCAGGACGGGTTGGTTGAGCACTGCACCTCAAAACATTCTCGTGAAGCCCAGCCCGTGGTGTGTCCGATATGTGCCTCAATGCCGTGGGGTGATCCCAATTACAAGAGTGCAGACTTCTTTCAACACCTCAGAATACGACATGCTTTTTCATACGATACGTTTGTGGATTACACCACAGATGAGCAAGCCATGATCCAGGAAGCCTTACAGCGCTCTCTGGTGGAAAACTGACGTGAGggacacacacacttgtacaacaccaaccaaaaaaacaacaatgttcATGCTTTATAAAAAAAGAATTCATTAATAACTAAA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040813-1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within cell differentiation and spermatogenesis. Predicted to be located in cytoplasm and nucleus. Is expressed in olfactory placode; peripheral olfactory organ; and pronephric duct. Human ortholog(s) of this gene implicated in psoriasis 12. Orthologous to human RNF114 (ring finger protein 114).

Ensembl:

ensembl_id ENSDART00000019667

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044943 lncRNA downstream 52217 3450998 ~ 3451379 (-) True XLOC_022098
TCONS_00044942 lncRNA downstream 511489 2960218 ~ 2992107 (-) True XLOC_022095
TCONS_00044941 lncRNA downstream 659342 2842399 ~ 2844254 (-) True XLOC_022093
TCONS_00044940 lncRNA downstream 659712 2842399 ~ 2843884 (-) False XLOC_022093
TCONS_00044939 lncRNA downstream 774587 2728104 ~ 2729009 (-) True XLOC_022092
TCONS_00043663 lncRNA upstream 162079 3673709 ~ 3680954 (-) True XLOC_022100
TCONS_00044944 lncRNA upstream 216460 3728090 ~ 3730606 (-) True XLOC_022102
TCONS_00043668 lncRNA upstream 241232 3752862 ~ 3759457 (-) False XLOC_022103
TCONS_00043672 lncRNA upstream 246159 3757789 ~ 3759436 (-) True XLOC_022103
TCONS_00043691 lncRNA upstream 1405339 4916969 ~ 4925131 (-) False XLOC_022113
TCONS_00043655 mRNA downstream 94456 3405665 ~ 3409140 (-) False XLOC_022097
TCONS_00043656 mRNA downstream 94819 3407065 ~ 3408777 (-) True XLOC_022097
TCONS_00043652 mRNA downstream 602429 2873434 ~ 2901167 (-) False XLOC_022094
TCONS_00043651 mRNA downstream 602429 2873434 ~ 2901167 (-) False XLOC_022094
TCONS_00043650 mRNA downstream 623243 2872855 ~ 2880353 (-) False XLOC_022094
TCONS_00043658 mRNA upstream 141756 3653386 ~ 3681026 (-) False XLOC_022100
TCONS_00043659 mRNA upstream 143496 3655126 ~ 3674443 (-) False XLOC_022100
TCONS_00043660 mRNA upstream 150438 3662068 ~ 3681031 (-) False XLOC_022100
TCONS_00043661 mRNA upstream 150484 3662114 ~ 3674450 (-) False XLOC_022100
TCONS_00043662 mRNA upstream 152757 3664387 ~ 3703569 (-) False XLOC_022100
TCONS_00043654 other downstream 447500 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043637 other downstream 2285095 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 2882510 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043611 other downstream 3014399 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043689 other upstream 1405275 4916905 ~ 4925625 (-) False XLOC_022113
TCONS_00043690 other upstream 1405325 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043705 other upstream 1699391 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 1788649 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043707 other upstream 1919566 5431196 ~ 5431319 (-) True XLOC_022120

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000150_01418874_01429051.mRNA False 3073 mRNA 0.36 6 CI01000150 1418586 ~ 1431170 (+)