RNA id: TCONS_00044943


Basic Information

Item Value
RNA id TCONS_00044943
length 304
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_022098
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 3450998 ~ 3451379 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttgagcacccctgctttaggtaCTACTGTGCATTTTTCAGTAGGATCCACTAAACCTGGTCAATCTCAAGAAGCTGAGACTTCCTCCGGTGTCTTTGACTGCACTAAGAAGCTCTTCAATATTTCAGTGAAAATGAACTGTGGTCTCCCTGGACCAATCTAGTGTAGAATTGCTACGATTCACTCTTTACGACCCTTTTGTCCTAATGTTTAAGCTGTCTATATCCTGGAGGATGTGAACGAGGACCAGGGGAGCCCTCGGGCCGAATTTGAGAcataaagaataattaaaaataaatgcagg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044942 lncRNA downstream 458891 2960218 ~ 2992107 (-) True XLOC_022095
TCONS_00044941 lncRNA downstream 606744 2842399 ~ 2844254 (-) True XLOC_022093
TCONS_00044940 lncRNA downstream 607114 2842399 ~ 2843884 (-) False XLOC_022093
TCONS_00044939 lncRNA downstream 721989 2728104 ~ 2729009 (-) True XLOC_022092
TCONS_00044712 lncRNA downstream 1029292 2420534 ~ 2421706 (-) True XLOC_022089
TCONS_00043663 lncRNA upstream 222330 3673709 ~ 3680954 (-) True XLOC_022100
TCONS_00044944 lncRNA upstream 276711 3728090 ~ 3730606 (-) True XLOC_022102
TCONS_00043668 lncRNA upstream 301483 3752862 ~ 3759457 (-) False XLOC_022103
TCONS_00043672 lncRNA upstream 306410 3757789 ~ 3759436 (-) True XLOC_022103
TCONS_00043691 lncRNA upstream 1465590 4916969 ~ 4925131 (-) False XLOC_022113
TCONS_00043655 mRNA downstream 41858 3405665 ~ 3409140 (-) False XLOC_022097
TCONS_00043656 mRNA downstream 42221 3407065 ~ 3408777 (-) True XLOC_022097
TCONS_00043652 mRNA downstream 549831 2873434 ~ 2901167 (-) False XLOC_022094
TCONS_00043651 mRNA downstream 549831 2873434 ~ 2901167 (-) False XLOC_022094
TCONS_00043650 mRNA downstream 570645 2872855 ~ 2880353 (-) False XLOC_022094
TCONS_00043657 mRNA upstream 52217 3503596 ~ 3511630 (-) True XLOC_022099
TCONS_00043658 mRNA upstream 202007 3653386 ~ 3681026 (-) False XLOC_022100
TCONS_00043659 mRNA upstream 203747 3655126 ~ 3674443 (-) False XLOC_022100
TCONS_00043660 mRNA upstream 210689 3662068 ~ 3681031 (-) False XLOC_022100
TCONS_00043661 mRNA upstream 210735 3662114 ~ 3674450 (-) False XLOC_022100
TCONS_00043654 other downstream 394902 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043637 other downstream 2232497 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 2829912 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043611 other downstream 2961801 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043689 other upstream 1465526 4916905 ~ 4925625 (-) False XLOC_022113
TCONS_00043690 other upstream 1465576 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043705 other upstream 1759642 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 1848900 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043707 other upstream 1979817 5431196 ~ 5431319 (-) True XLOC_022120