G263874 (LOC106581831)


Basic Information

Item Value
gene id G263874
gene name LOC106581831
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46207701 ~ 46208016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU300010
TTACACCGTGTCCTAATCCCTACGGTGCACTAcgttcatatgtgtgtgtgtgtatgtgtgtgcctgcgcATGGCGACAATTACCTGTTGGACGTCCTGTTGGAACACACAGAGCTGTAGCCTCTGGTGCAGGCGGACTTTGCGGTGCTGCCAGATGCTCTCCAGGCGTCTCTGGTGGTGCAGGACCTCGTGGACCACGTCCAGGATACAGTGGACCGCCTTGGAGTAGTTGGCTGTGGCCGTCAGAGACTCTGAGTTCCCCGGGCTCAGCGGTCTCTGGAGGACATCCAGTAGGGCCTTGCCGTCCTGACTGAcct

Function

NR:

description
PREDICTED: kalirin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300010 True 316 lncRNA 0.58 1 46207701 46208016

Neighbor

gene id symbol gene type direction distance location
LOC118957146 NA coding upstream 163856 46032765 ~ 46043845 (+)
LOC110520034 LOC106586154 coding upstream 197054 46008199 ~ 46010647 (+)
LOC110520033 LOC106586153 coding upstream 274679 45903665 ~ 45933022 (+)
LOC110504149 wnt6 coding upstream 323507 45852182 ~ 45884194 (+)
asic4a LOC106586149 coding upstream 384400 45726237 ~ 45823301 (+)
LOC110520040 LOC106586160 coding downstream 133832 46341848 ~ 46441801 (+)
LOC110504152 LOC106586162 coding downstream 250574 46458590 ~ 46544295 (+)
LOC110520045 LOC106586166 coding downstream 516039 46724055 ~ 46777392 (+)
LOC110520046 LOC106586167 coding downstream 593042 46801058 ~ 46832288 (+)
LOC110504153 gpd2 coding downstream 812979 47020995 ~ 47027946 (+)
G263872 NA non-coding upstream 2015 46205485 ~ 46205686 (+)
G263869 NA non-coding upstream 3587 46203888 ~ 46204114 (+)
G263853 NA non-coding upstream 33116 46174327 ~ 46174585 (+)
G263852 NA non-coding upstream 33731 46173571 ~ 46173970 (+)
G263850 NA non-coding upstream 35746 46171735 ~ 46171955 (+)
G263880 NA non-coding downstream 9443 46217459 ~ 46217660 (+)
G263882 LOC106581831 non-coding downstream 13225 46221241 ~ 46221710 (+)
G263883 LOC107671282 non-coding downstream 14352 46222368 ~ 46222615 (+)
G263891 NA non-coding downstream 23396 46231412 ~ 46231656 (+)
G263897 NA non-coding downstream 30446 46238462 ~ 46238702 (+)
G263859 LOC107588258 other upstream 22897 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 128276 46075484 ~ 46079425 (+)
G263710 NA other upstream 273283 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 368221 45838921 ~ 45839480 (+)
G262037 NA other upstream 1682293 44520419 ~ 44525408 (+)
G267358 NA other downstream 3302787 49510803 ~ 49512475 (+)
G267381 NA other downstream 3346482 49554498 ~ 49555838 (+)
G267529 NA other downstream 3628601 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 3954285 50162278 ~ 50184327 (+)

Expression


Co-expression Network