G272290


Basic Information

Item Value
gene id G272290
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53185564 ~ 53185777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU309196
cttttaacggacctctgagactatcacagtgctggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaa

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309196 True 214 lncRNA 0.39 1 53185564 53185777

Neighbor

gene id symbol gene type direction distance location
acvr2aa LOC106586327 coding upstream 13138 53124656 ~ 53172428 (+)
LOC110520185 NA coding upstream 242791 52874928 ~ 52942773 (+)
LOC110520180 LOC106586330 coding upstream 425188 52708371 ~ 52760376 (+)
LOC110520179 arl4c coding upstream 598516 52585011 ~ 52587048 (+)
LOC110520178 LOC106582420 coding upstream 618273 52508775 ~ 52567291 (+)
LOC110520189 LOC106586324 coding downstream 49766 53235543 ~ 53253493 (+)
kif5c LOC106586321 coding downstream 69639 53255416 ~ 53288980 (+)
LOC110520190 LOC106586322 coding downstream 105507 53291284 ~ 53339392 (+)
LOC110520191 LOC106586320 coding downstream 161879 53347656 ~ 53375674 (+)
LOC110520194 LOC106586317 coding downstream 250251 53436028 ~ 53449882 (+)
G272283 NA non-coding upstream 12393 53172836 ~ 53173171 (+)
G272258 NA non-coding upstream 66069 53119173 ~ 53119495 (+)
G272257 NA non-coding upstream 67199 53117965 ~ 53118365 (+)
G272256 NA non-coding upstream 68102 53117228 ~ 53117462 (+)
G272185 NA non-coding upstream 169288 53015850 ~ 53016276 (+)
G272308 NA non-coding downstream 30936 53216713 ~ 53217028 (+)
G272837 NA non-coding downstream 193633 53379410 ~ 53379650 (+)
G272867 NA non-coding downstream 238093 53423870 ~ 53478570 (+)
LOC110520169 il1rl1 other upstream 1606881 51573980 ~ 51582567 (+)
G269291 rap2a other upstream 2285287 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 2580748 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 3002538 50162278 ~ 50184327 (+)
LOC110520187 LOC106586325 other downstream 35650 53174264 ~ 53235027 (+)
G272965 NA other downstream 463048 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 471684 53657461 ~ 53658683 (+)
G273094 LOC106586310 other downstream 655487 53841264 ~ 53841617 (+)

Expression


Co-expression Network