XLOC_022290 (rpl10)


Basic Information

Item Value
gene id XLOC_022290
gene name rpl10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19712557 ~ 19715859 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044003
AGTTTTCTTCCTTTCCTCCATTAGGTGAGTGCGTGATCGCAACCATGGGCCGCCGTCCAGCCCGTTGTTACAGATACTGTAAGAACAAGCCTTACCCCAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAAATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTTCCCCTGTGTGCTCACATGGTGTCTGATGAGTATGAGCAGCTGTCCAGTGAAGCTCTTGAGGCTGCCCGTATCTGCGCCAACAAGTATATGGTGAAGACTTGCGGTAAAGATGGCTTCCACATCCGTGTGCGCCTGCACCCCTTCCACGTCATCCGCATTAACAAAATGTTGTCCTGTGCCGGAGCTGATAGGCTCCAGACTGGTATGCGTGGTGCGTTCGGGAAGCCTCAGGGCACAGTGGCCCGTGTGCACATTGGCCAGGTCATCATGTCTGTGCGCACAAAGGCCCAGAACAAGGAGCATGTGATCGAGGCTCTGAGGAGAGCCAAGTTCAAGTTCCCTGGCCGTCAGAAGATCCACGTGTCCAAGAAGTATGGCTTCACAAAGTTCAACACGTGTGACTTTGATAACATGCTGGCGGAGAAGCGTCTGATTCCTGATGGCTGCGGGGTGAAATACATCCCCAGCCGTGGACCCCTGAGCCGCTGGAAGGCCCTTCATGCCAACTAAGCACCTCACACTTGCTTTCGTTTGTGTGAAAAAGGCTCAAATGACCACAAATAAAGTCCATTCTTTGA
>TCONS_00044004
GTAGTTTCCCTCGTTGCATTATGACGCAGCGGAAAGGCAGTTTTCTTCCTTTCCTCCATTAGATCGCAACCATGGGCCGCCGTCCAGCCCGTTGTTACAGATACTGTAAGAACAAGCCTTACCCCAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAAATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTTCCCCTGTGTGCTCACATGGTGTCTGATGAGTATGAGCAGCTGTCCAGTGAAGCTCTTGAGGCTGCCCGTATCTGCGCCAACAAGTATATGGTGAAGACTTGCGGTAAAGATGGCTTCCACATCCGTGTGCGCCTGCACCCCTTCCACGTCATCCGCATTAACAAAATGTTGTCCTGTGCCGGAGCTGATAGGCTCCAGACTGGTATGCGTGGTGCGTTCGGGAAGCCTCAGGGCACAGTGGCCCGTGTGCACATTGGCCAGGTCATCATGTCTGTGCGCACAAAGGCCCAGAACAAGGAGCATGTGATCGAGGCTCTGAGGAGAGCCAAGTTCAAGTTCCCTGGCCGTCAGAAGATCCACGTGTCCAAGAAGTATGGCTTCACAAAGTTCAACACGTGTGACTTTGATAACATGCTGGCGGAGAAGCGTCTGATTCCTGATGGCTGCGGGGTGAAATACATCCCCAGCCGTGGACCCCTGAGCCGCTGGAAGGCCCTTCATGCCAACTAAGCACCTCACACTTGCTTTCGTTTGTGTGAAAAAGGCTCAAATGACCACAAATAAAGTCCATTCTTTGA
>TCONS_00044005
AGGTGAGTGCGTGGTAAGAGCGCGGTGCTTTGCTCTCTTCCTTTTTGTcgaaaaaacacattatttttccAATGATATACACGCGTTGTCCTTATTAAATCAATTGTTATTGTGTACGTTACAGATCGCAACCATGGGCCGCCGTCCAGCCCGTTGTTACAGATACTGTAAGAACAAGCCTTACCCCAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAAATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTTCCCCTGTGTGCTCACATGGTGTCTGATGAGTATGAGCAGCTGTCCAGTGAAGCTCTTGAGGCTGCCCGTATCTGCGCCAACAAGTATATGGTGAAGACTTGCGGTAAAGATGGCTTCCACATCCGTGTGCGCCTGCACCCCTTCCACGTCATCCGCATTAACAAAATGTTGTCCTGTGCCGGAGCTGATAGGCTCCAGACTGGTATGCGTGGTGCGTTCGGGAAGCCTCAGGGCACAGTGGCCCGTGTGCACATTGGCCAGGTCATCATGTCTGTGCGCACAAAGGCCCAGAACAAGGAGCATGTGATCGAGGCTCTGAGGAGAGCCAAGTTCAAGTTCCCTGGCCGTCAGAAGATCCACGTGTCCAAGAAGTATGGCTTCACAAAGTTCAACACGTGTGACTTTGATAACATGCTGGCGGAGAAGCGTCTGATTCCTGATGGCTGCGGGGTGAAATACATCCCCAGCCGTGGACCCCTGAGCCGCTGGAAGGCCCTTCATGCCAACTAAGCACCTCACACTTGCTTTCGTTTGTGTGAAAAAGGCTCAAATGACCACAAATAAAGTCCATTCTTTG
>TCONS_00044006
AACATTTGTCTCAGCAGCTTTGTGAATATCTTTTGAGAACTCTTAGATAATAACATTTAACTTTTCTTTAGAAAATCTCTGTGTTGAGATGAAATTCTGATGATTTTTTTAATCCGCTGATTCATTTGTCTAGCTCTTGAGGCTGCCCGTATCTGCGCCAACAAGTATATGGTGAAGACTTGCGGTAAAGATGGCTTCCACATCCGTGTGCGCCTGCACCCCTTCCACGTCATCCGCATTAACAAAATGTTGTCCTGTGCCGGAGCTGATAGGCTCCAGACTGGTATGCGTGGTGCGTTCGGGAAGCCTCAGGGCACAGTGGCCCGTGTGCACATTGGCCAGGTCATCATGTCTGTGCGCACAAAGGCCCAGAACAAGGAGCATGTGATCGAGGCTCTGAGGAGAGCCAAGTTCAAGTTCCCTGGCCGTCAGAAGGTAATGCAACACAAATGAAAACTAAGTTGTAATTGTCAAGCGGTCGCTGATGTTGGGTTTCTTTCTCTTTAGATCCACGTGTCCAAGAAGTATGGCTTCACAAAGTTCAACACGTGTGACTTTGATAACATGCTGGCGGAGAAGCGTCTGATTCCTGATGGCTGCGGGGTGAAATACATCCCCAGCCGTGGACCCCTGAGCCGCTGGAAGGCCCTTCATGCCAACTAAGCACCTCACACTTGCTTTCGTTTGTGTGAAAAAGGCTCAAATGACCACAAATAAAGTCCATTCTT
>TCONS_00044008
GTGAGTGCGTGGTAAGAGCGCGGTGCTTTGCTCTCTTCCTTTTTGTcgaaaaaacacattatttttccAATGATATACACGCGTTGTCCTTATTAAATCAATTGTTATTGTGTACGTTACAGATCGCAACCATGGGCCGCCGTCCAGCCCGTTGGTAAGTTGTGAATTTGGTGTTTTAAAAAGTAGCCGCAATGAAAATGGCAGGCCCCGCTAACCATGTGCAGCCCGCCGGCCACATACAAGGAGTAGTGACAGGACACTCACGAGCTCTGCTTTCTGATACTAACAAGTGTTTATATAAAAcaactttaaatttaatttaaatgcatgATAGGTTATTTGTTGGAAGAAGTGGTTTTGGTGTCAGGCTAACAAATTAGCCTCCCAACAGTCACTTTAatgttatttgacatttttgctgtttgcagCGTAATAGTTAAATAAGATCTTATGGTAACTTTATAAACTGTCGTATATTCCTATATATAAGAGTTTTAGTCTTGTTAATGGTCTACTGTCTTTTCCAGTTACAGATACTGTAAGAACAAGCCTTACCCCAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAAATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTTCCCCTGTGTGCTCACATGGTGTCTGATGAGTATGAGCAGCTGTCCAGTGAAGCTCTTGAGGCTGCCCGTATCTGCGCCAACAAGTATATGGTGAAGACTTGCGGTAAAGATGGCTTCCACATCCGTGTGCGCCTGCACCCCTTCCACGTCATCCGCATTAACAAAATGTTGTCCTGTGCCGGAGCTGATAGGCTCCAGACTGGTATGCGTGGTGCGTTCGGGAAGCCTCAGGGCACAGTGGCCCGTGTGCACATTGGCCAGGTCATCATGTCTGTGCGCACAAAGGCCCAGAACAAGGAGCATGTGATCGAGGCTCTGAGGAGAGCCAAGTTCAAGTTCCCTGGCCGTCAGAAGGTAATGCAACACAAATGAAAACTAAGTTGTAATTGTCAAGCGGTCGCTGATGTTGGGTTTCTTTCTCTTTAGATCCACGTGTCCAAGAAGTATGGCTTCACAAAGTTCAACACGTGTGACTTTGATAACATGCTGGCGGAGAAGCGTCTGATTCCTGATGGCTGCGGGGTGAAATACATCCCCAGCCGTGGACCCCTGAGCCGCTGGAAGGCCCTTCATGCCAACTAAGCACCTCACACTTGCTTTCGTTTGTGTGAAAAAGGCTCAAATGACCACAAATAAAGTCCATTCTT
>TCONS_00044007
AAGGAGTAGTGACAGGACACTCACGAGCTCTGCTTTCTGATACTAACAAGTGTTTATATAAAAcaactttaaatttaatttaaatgcatgATAGGTTATTTGTTGGAAGAAGTGGTTTTGGTGTCAGGCTAACAAATTAGCCTCCCAACAGTCACTTTAatgttatttgacatttttgctgtttgcagCGTAATAGTTAAATAAGATCTTATGTTACAGATACTGTAAGAACAAGCCTTACCCCAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAAATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTTCCCCTGTGTGCTCACATGGTGTCTGATGAGTATGAGCAGCTGTCCAGTGAAGCTCTTGAGGCTGCCCGTATCTGCGCCAACAAGTATATGGTGAAGACTTGCGGTAAAGATGGCTTCCACATCCGTGTGCGCCTGCACCCCTTCCACGTCATCCGCATTAACAAAATGTTGTCCTGTGCCGGAGCTGATAGGCTCCAGACTGGTATGCGTGGTGCGTTCGGGAAGCCTCAGGGCACAGTGGCCCGTGTGCACATTGGCCAGGTCATCATGTCTGTGCGCACAAAGGCCCAGAACAAGGAGCATGTGATCGAGGCTCTGAGGAGAGCCAAGTTCAAGTTCCCTGGCCGTCAGAAGATCCACGTGTCCAAGAAGTATGGCTTCACAAAGTTCAACACGTGTGACTTTGATAACATGCTGGCGGAGAAGCGTCTGATTCCTGATGGCTGCGGGGTGAAATACATCCCCAGCCGTGGACCCCTGAGCCGCTGGAAGGCCCTTCA
>TCONS_00044010
AGATCGCAACCATGGGCCGCCGTCCAGCCCGTTGTTACAGATACTGTAAGAACAAGCCTTACCCCAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAAATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTTCCCCTGTGTGCTCACATGGTGTCTGATGAGTATGAGCAGCTGTCCAGTGAAGGTGAGAGATGCTGCGCTTACTgaattttacaatttgacattACATTTCAAGCACTGTAGTTCTGggtcatatttaaaatattatacaaaaaaataaaaactgctcctaacttgctttttttttgagagaattgtaaaaaaaaaaaataataaaataaaatttggtgTCAGTCCTAAATTTTAGACTGTAATGTtatgtatctttatttatttgctttgagTATTTCACAAAGTAATTTAGTGCTAAAACTACTCCTAAATCAGTGAGATGTTAGAGCACTGTAGAGGACTCCTAAAACACTAAGACCAAACCATAAACTTTCCTAAAGAGGCTGTTGCTGGCAATCTGCATTCGGAAAGgaaaacgtttttaaaaatttGACTGAGCTTTTGAAAAGGTAAATCTTAAGTAATTATGCAAATATATTCTATaagtaaatagtattttttatctTCTCTGCAGCTTATTAAGCCGACTGGACAGGTTGTGTGTACTTGTGTGGTGTGCAAAGGCTGCAGACAGTGAATCTTTGGTTGTGTATGAGCCTGGCTGGGTAGTGCCGGGCCCTTTAAGGGACCATTGAAACATGCCATtgctgaacattaaaaaaaagagcatATGATTGTCAAGTtctatttttacacattttgtatacctttttaaatatttaaaaccatttaatatTT
>TCONS_00044011
GTGAGTGCGTGGTAAGAGCGCGGTGCTTTGCTCTCTTCCTTTTTGTcgaaaaaacacattatttttccAATGATATACACGCGTTGTCCTTATTAAATCAATTGTTATTGTGTACGTTACAGATCGCAACCATGGGCCGCCGTCCAGCCCGTTGGTAAGTTGTGAATTTGGTGTTTTAAAAAGTAGCCGCAATGAAAATGGCAGGCCCCGCTAACCATGTGCAGCCCGCCGGCCACATACAAGGAGTAGTGACAGGACACTCACGAGCTCTGCTTTCTGATACTAACAAGTGTTTATATAAAAcaactttaaatttaatttaaatgcatgATAGGTTATTTGTTGGAAGAAGTGGTTTTGGTGTCAGGCTAACAAATTAGCCTCCCAACAGTCACTTTAatgttatttgacatttttgctgtttgcagCGTAATAGTTAAATAAGATCTTATGGTAACTTTATAAACTGTCGTATATTCCTATATATAAGAGTTTTAGTCTTGTTAATGGTCTACTGTCTTTTCCAGTTACAGATACTGTAAGAACAAGCCTTACCCCAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAAATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTTCCCCTGTGTGCTCACATGGTGTCTGATGAGTATGAGCAGCTGTCCAGTGAAGGTGAGAGATGCTGCGCTTACTgaattttacaatttgacattACATTTCAAGCACTGTAGTTCTGggtca

Function

symbol description
rpl10 Enables translation regulator activity. Involved in embryonic brain development and regulation of translation. Acts upstream of or within brain development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in head and midbrain hindbrain boundary. Human ortholog(s) of this gene implicated in autistic disorder and syndromic X-linked mental retardation 35. Orthologous to several human genes including RPL10 (ribosomal protein L10).

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:1990403 embryonic brain development biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006417 regulation of translation biological_process
GO:0007420 brain development biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0045182 translation regulator activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-8656 Enables translation regulator activity. Involved in embryonic brain development and regulation of translation. Acts upstream of or within brain development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in head and midbrain hindbrain boundary. Human ortholog(s) of this gene implicated in autistic disorder and syndromic X-linked mental retardation 35. Orthologous to several human genes including RPL10 (ribosomal protein L10).

Ensembl:

ensembl_id ENSDARG00000025581

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044003 False 760 mRNA 0.53 7 19712557 19715821
TCONS_00044004 False 787 mRNA 0.52 7 19712557 19715859
TCONS_00044005 False 848 mRNA 0.51 6 19712558 19715799
TCONS_00044006 False 728 lncRNA 0.47 2 19712560 19713530
TCONS_00044008 False 1289 lncRNA 0.46 4 19712560 19715797
TCONS_00044007 False 828 mRNA 0.49 6 19712635 19715557
TCONS_00044010 False 887 lncRNA 0.37 3 19713864 19715677
TCONS_00044011 True 763 lncRNA 0.41 2 19714481 19715797

Neighbor

gene id symbol gene type direction distance location
XLOC_022289 ognb coding downstream 25766 19679648 ~ 19686791 (-)
XLOC_022288 CR376797.1 coding downstream 34045 19660002 ~ 19678512 (-)
XLOC_022287 dnah12 coding downstream 154001 19506023 ~ 19558556 (-)
XLOC_022286 asb14b coding downstream 209027 19490383 ~ 19503530 (-)
XLOC_022285 tasorb coding downstream 225986 19473935 ~ 19486571 (-)
XLOC_022292 NA coding upstream 106575 19822434 ~ 19831739 (-)
XLOC_022293 atp2b3b coding upstream 118356 19834215 ~ 19953089 (-)
XLOC_022294 CT574579.1 coding upstream 191969 19907828 ~ 19907944 (-)
XLOC_022295 NA coding upstream 228314 19944173 ~ 19945422 (-)
XLOC_022296 ccnq coding upstream 253097 19968956 ~ 19977214 (-)
XLOC_022284 NA non-coding downstream 239938 19467540 ~ 19472619 (-)
XLOC_022283 CR388168.3 non-coding downstream 403647 19308796 ~ 19308910 (-)
XLOC_022274 NA non-coding downstream 770507 18929913 ~ 18942050 (-)
XLOC_022273 NA non-coding downstream 799398 18904674 ~ 18913159 (-)
XLOC_022272 NA non-coding downstream 814035 18869217 ~ 18898522 (-)
XLOC_022307 NA non-coding upstream 632600 20348459 ~ 20354924 (-)
XLOC_022310 NA non-coding upstream 703274 20419133 ~ 20421573 (-)

Expression


Co-expression Network