XLOC_022296 (ccnq)


Basic Information

Item Value
gene id XLOC_022296
gene name ccnq
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19968956 ~ 19977214 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044021
GGAGTTTACTCACTCTTAAAAGTTATTTGGCGGTTTAAAAAACGCCGTACGTAatagaatatttttaaataatctctTTTACAGCTGAAGAAAACATTTTCTACTTGATAAATTATTTGCCATTCTTTCGTCGTCCACGTATATCTTCTTCCCAGACAACGGAGGCGCTGTAGAGCTCTGTGTGGGAGGCCGAACATTAGCCGAAGAAAAGTCTCAATTTACGTGCTTACGGTTGTAGTACAAACGACTAATACTAAAGAAGTACATGTTATGTTTAAAGACGAAATTTAATACAAGCAATGTAAACTGATAAACGCGCTTTGAAACGTCTGCTGAACGACGTAAAATGAGCGCGCATGCGTCAACATCTGCAGCTGCCAATGAAGCGAGAGGCAGAAGAAGTGCTGAAGATGTGGAATACTCCAAAACACACTTCAGAGTTTGTCGCTTTATCACCGAGACGGGGGTGAAGCTGGGCATGAGATCTGTGCCCATGGCTACTGCATGTGTGCTGTATCATAGGTTCTTCCAGTCTGCCAGTTTGCAGATCTATGAGCCTTATCTAGTGGCCATGTCTGCCATCTACCTCGCAGGCAAAGTGGAAGAGCAGCATCTCAGGACCAGAGATATCATCAATGTCTGTCACAGGTATTTTCATCCAGATAGTGAACCACTAGAACTTAATGGGAAGTTCTGGGAGTTGAGGGACAGCATTGTGCAATGTGAGCTCCTCATCCTTCGACAGCTGAACTTTCAAGTGACCTTTGAGCATCCACACAAGTACCTGCTGCACTACCTGCTCTCCGTAAGAAGTCTCCTGAACCGCCATGCCTGGTCTCGAACCCCCATTGCAGAGACAGCTCTGGCTGTATTAAAAGACAGTTACCATGGCTCTGTGTGTGTCCGCCATCGGCCTCAACACCTCGCCCTCACCGCCCTCTATCTTGCTCTCCAGACATATGGAGTGCAGCTCCCCAGAGGAGAACTAGAATGGTGGCAGGTTGTTTGTGCAGACATCACCAAGGCTCAAATTGAGACCATCATGAGTGAATTACTGCAGCTCTACGACATGGAGGCCAAGTGTAcctgagagaaaaaaataataatcaaactgGTACTAAAACGCTGACATGGAAACCCACACACTTATCTGTACATATTGCACAGACGTTTCGTGACGATGGTCTACACAATCACTGAAGCCTCTTTTTACCGACATTGTGATGTGGCCAAATGTGCTGTACATTTTAATTGCATAACCGAATATCAATGTTTAGAAAGTCTCTGCTAGaatgaagaatgatgtgggggatTTAAGTGGCTGTATGAAAACCAGACTTAAGCCACACCACATCAATCAATTCACAGCCACCGACCTACTTTCTTCTCTTACCTTGTGCTGTTTTTCCTCCTGAAGAGGGGGAGAGAAATTACAAAAGAGGTGAAATAGCTGCTATAAGGAAGAATGAAACAAAAGAAGATTCCTCCTGTCCCCTGAGCTAAACTGTAAGGTAAAGCGGCTAGATCTGGGCCATTTcgtttacattttcaaatttaaTTACTGTCCTCCTCTCCCTACAGAACTTGTCCCAGTAGACTTGTTTTATGTAACTCCCTGAAGCAGTATTACTGTATGCTGTAAAGCAAAGCACTATCATTTTATTACTGCaaaacttcaaaaacaaaactttaccaaacaattattttttctcTGCTAGCAATGAACATGAACTGACAGGCAGGTTTgtattttacaatataataattcctaataaaccatttatttgcatgaatgcattttcaaaatagcacctgaaaatagactttcttttatttttttatttccccccATCTATGATGTTCTACTTCAAATTTCTGGATCTAGTTAGGTCAGGACATCGCTCTGGAGTGGATCTTAATAAGTTACTATGGCAACTGCTATTGTGGAGGGAGCCTTTGAAACATACAAATGTGAAACTCCATTATAGCACACCTGTCAACCTCAGCACATCAAATAATTGCGGTCGGGAAAATGTACTAATTTTGCCATTATTCACCAAAAGCAGCCGTTTCCCCTGTAGCTAATTGAATTGTGTTGACCGGTGACTGCAACTGCTGTTTAAGAGATCACTTAGCTTTAGTTTTCGCTCTGTGCAACTTTAATCTGCTGTGTTgtaaaaatctgttaaatttagTCCATTCATTTACTACAGAATGTTTCAGACATTGGCATTTATTGGCGTAAATTGATCATCTCTAAAGTtttgttaatggtttattaaaaggGTAAAGATGgct

Function

symbol description
ccnq Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in syndactyly-telecanthus-anogenital and renal malformations syndrome. Orthologous to several human genes including CCNQ (cyclin Q).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050522-495 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in syndactyly-telecanthus-anogenital and renal malformations syndrome. Orthologous to several human genes including CCNQ (cyclin Q).

Ensembl:

ensembl_id ENSDARG00000037537

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044021 True 2298 mRNA 0.41 5 19968956 19977214

Neighbor

gene id symbol gene type direction distance location
XLOC_022293 atp2b3b coding downstream 15867 19834215 ~ 19953089 (-)
XLOC_022295 NA coding downstream 23534 19944173 ~ 19945422 (-)
XLOC_022294 CT574579.1 coding downstream 61012 19907828 ~ 19907944 (-)
XLOC_022292 NA coding downstream 137217 19822434 ~ 19831739 (-)
XLOC_022290 rpl10 coding downstream 253097 19712557 ~ 19715859 (-)
XLOC_022297 b4galt3 coding upstream 7594 19984808 ~ 20010579 (-)
XLOC_022298 bgnb coding upstream 36816 20014030 ~ 20051369 (-)
XLOC_022299 si:dkey-32e6.6 coding upstream 91666 20068880 ~ 20100436 (-)
XLOC_022300 tktb coding upstream 136164 20113378 ~ 20126257 (-)
XLOC_022301 lrrc23 coding upstream 150669 20127883 ~ 20133994 (-)
XLOC_022291 CR352234.4 non-coding downstream 255728 19713095 ~ 19713228 (-)
XLOC_022284 NA non-coding downstream 496337 19467540 ~ 19472619 (-)
XLOC_022307 NA non-coding upstream 371245 20348459 ~ 20354924 (-)
XLOC_022310 NA non-coding upstream 441919 20419133 ~ 20421573 (-)
XLOC_022312 NA non-coding upstream 540395 20517609 ~ 20518851 (-)
XLOC_022314 NA non-coding upstream 852131 20829345 ~ 20836604 (-)
XLOC_022315 NA non-coding upstream 881099 20858313 ~ 20938578 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_06037150_06039894 FAM58A coding CI01000001 null 6037133 ~ 6039894 (-)