XLOC_022299 (si:dkey-32e6.6)


Basic Information

Item Value
gene id XLOC_022299
gene name si:dkey-32e6.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20068880 ~ 20100436 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044027
AGGTACACAGTGAGCATCTGAACAGATCGGATCAGGACCATGCAGGCTCTTTTGGTGTTCTGTGTATGCTTAGGGGCTTTAGTGGCTAAAGGAGAAGCCTTCAATGTACTGGATTCGCTGATTAAACTGGCTGGTGTTTCAAACTCGCAGCATCAACTGGTGGATTCTTCTTCAGCATCAGGTGAACAGAGAACCAATCAAGCAGAAAGAACAAAGCAACAGAGCGACGCTGCCTCAGACACACAGTCTGTTCTGGGCCGAACTGAGGGTGTGTGGGTGGAGCTGAACGCCGTGCTGGAGAGATGGGGCGGTGCTGCGGGGAAACTAAACACAATCCTGAGGGAACTCAAAGACGAGAAAAAACGCCTTCTGGACCAAGGAGAAGAGCAAAAAGCCAAGAAAAAGGAagaagaggatgatgatgatgaagaagaagaagaggatgaggaggaggaggaagaagaggaggaggaggaagaagaaggaGAGGAGGGAAAGGAAGAAGAGGAAGCAGAAGAAGAGGAGAATGAAGCATCTAACAGCACTCTAACAGACTCATTACCAGAAGGCTGCCAACTGGCAGAATCTCGATTGTCCTGCATGCAGATTGGCCTGTCCGAACTGCCCGTCATCACAAATCTGGAAGTCACCATACTTGAGCTGCCTGGGAATAACTTAACAAGCATTCCTCCCAGTGGTTTTTCCGGACTGCCAAATCTTGAAGAGCTTGACCTAAGTATGAACAGGCTGGACGACTCCTCTTTAGACTCGGCTCTCTTTATGaatctGACAAAGCTGAAAAGACTGAAACTTGATGGCAATGATCTTACAATAATTCCAAACTTGCCCACTTCTGTGGAGGATCTAAagataaacaacaataaaataacccATCTGGCTTCACATGTCTTTAAAGgGTTTAGTAACCTACAAGTGTTGGAACTGGCAGGAAACATTCTCTACGAGGGCAGCATTGCACCCTGGGCCTTCAAACCTCTGAAGGCACTCAAGTATTTACGACTGGATAAAAACAGATTCAGCTCCATTCCAGCAGGATTGCCCCCATCTATAGAGGAACTGAGGTTGCAGGAAAATCAAATAGTAGAGATCCAGGACAGGCTTTTGGACAAGTGTGTCCACCTGAAGGTGTTGGATCTCAGTCACAATCTATTGAAAGAGAACAGCATCTACCCAGAGGCTTGGATCAAACAGCCGAAGCTGGAATCTCTTGACCTGTCATATAACCAGATGGCAGTGGTGCCCACAGATCTGCCCAGGGCCTTGCTCTATCTCTCTTTGCAGCACAACCACATTCATTCCATTCCTCCATACTCACTGAGTCACCTCCGCCCAGGCTTACAGACTCTACGCCTTTCACACAACCTGTTAGAGGAGCACACTGTACAAGGGAAGTCTTTTCGTGGAGTATATCAAAGTCTGGTTGAGTTACACTTGGACAACAACCGGTTTGAGAGGGTTCCCCTCAACATGCGCCACTTCAAGAAACTCCAGCTGCTGCATCTAGACCACAACCGGATAAGTCTGTCCCCTCAAAGTCGCTTTGTAAGGTTAAAAGGACGGAGGACTCTCCCCTGTCAACTGTCCATTTAGAGTACAACTACATCAATGTGAAGAAAATCCACCGTGCTGCTTTCTCCTGCATTCAAGACCAGAGCAAGATCATCCTGGAGCCCCAGAACCAAAGCCAGGGCTACTAAACTACAGAAATGTCACCTTGTCACTTCACAGCCTCCCTGTCAAACACTCTCAGACTT

Function

symbol description
si:dkey-32e6.6 Predicted to enable collagen V binding activity and heparin binding activity. Predicted to be involved in extracellular matrix organization and positive regulation of cell-substrate adhesion. Predicted to be active in extracellular matrix.

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0010811 positive regulation of cell-substrate adhesion biological_process
GO:0031012 extracellular matrix cellular_component
GO:0008201 heparin binding molecular_function
GO:0070052 collagen V binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-90 Predicted to enable collagen V binding activity and heparin binding activity. Predicted to be involved in extracellular matrix organization and positive regulation of cell-substrate adhesion. Predicted to be active in extracellular matrix.

Ensembl:

ensembl_id ENSDARG00000070857

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044027 True 1775 mRNA 0.47 9 20068880 20100436

Neighbor

gene id symbol gene type direction distance location
XLOC_022298 bgnb coding downstream 17511 20014030 ~ 20051369 (-)
XLOC_022297 b4galt3 coding downstream 58301 19984808 ~ 20010579 (-)
XLOC_022296 ccnq coding downstream 91666 19968956 ~ 19977214 (-)
XLOC_022293 atp2b3b coding downstream 115791 19834215 ~ 19953089 (-)
XLOC_022300 tktb coding upstream 12942 20113378 ~ 20126257 (-)
XLOC_022301 lrrc23 coding upstream 27447 20127883 ~ 20133994 (-)
XLOC_022302 si:dkey-32e6.3 coding upstream 37084 20137520 ~ 20143211 (-)
XLOC_022303 usp19 coding upstream 44864 20145300 ~ 20177527 (-)
XLOC_022304 lamb2 coding upstream 79723 20180159 ~ 20258490 (-)
XLOC_022295 NA non-coding downstream 123458 19944173 ~ 19945422 (-)
XLOC_022294 CT574579.1 non-coding downstream 160936 19907828 ~ 19907944 (-)
XLOC_022292 NA non-coding downstream 237141 19822434 ~ 19831739 (-)
XLOC_022291 CR352234.4 non-coding downstream 355652 19713095 ~ 19713228 (-)
XLOC_022284 NA non-coding downstream 596261 19467540 ~ 19472619 (-)
XLOC_022307 NA non-coding upstream 248023 20348459 ~ 20354924 (-)
XLOC_022310 NA non-coding upstream 318697 20419133 ~ 20421573 (-)
XLOC_022312 NA non-coding upstream 417173 20517609 ~ 20518851 (-)
XLOC_022314 NA non-coding upstream 728909 20829345 ~ 20836604 (-)
XLOC_022315 NA non-coding upstream 757877 20858313 ~ 20938578 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_06104303_06118257 NA coding CI01000001 null 6104094 ~ 6118421 (-)