XLOC_022315


Basic Information

Item Value
gene id XLOC_022315
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20858313 ~ 20938578 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044996
CCAGTTTCTTGATACCGGCAGAGGATTTTGGACACGCAGCCATGGGAAACGCGAAGCTGTCTTGAGATCACGCAGGGACGGATGCCGTGACGTAAAATGCACCATGAAGGCTCTCGGGATTCCTCCATATGCCAAGCATGTGATTTTGTCAAGGAGCACCCAGCCACTGCACTGTGAACCCTTGTGTGCCGTCTCCGGCAGGACACCTCCCTACGCTGAGCTCTTTCATGTTTGTGAAGTCTGATGGCGGGACGTGTGTGAGCGTGAAGAGGTCACGACTAGGAAGGTCAGGCTGCATGGGGTGTTTCTTTCTCCCTTAAACCTCAATACACAGAGACTATTAACTCCTCACTACAAACAAACCAGGGGTCACGAGCTGGCAGATCGAAGAAACTGAGCTGACTTGGGATAATTTTTTGTCACCTGATAAGAGCTGATAAGGGCTTGTGACAGATGCTAGATATTGTTATTTGTTTGAGtgtcgataaaaaaaaaaatcagacactatgcatatgtatctatgtatgtactgtatgtatagtgAATGTGTATCACAGTCAACATTTTTTTGTAGTGggtcaaaataaattatatacacaAG
>TCONS_00044997
CAGAAATTGTCTCTTGGggtaaaaaaaactgctgaaaatgTGAAATAATGAGACTGCTGAAATAGGTTATAGAAATAACTTACATTAAATGTAAACGCGGAATCCACGTGACTTTGCCTACAAACTCCACGTAGCCTACGCTTCACTGCACTTTTCAGATAACATGCAACAAGAGCAATATAATTGTTCTATTTTTAAACAGGTGTCATAAAAACTTACAGTGGATAAAAGATACCGCGTTGCTTTTAGCACGTTTACCACATGTAACGTTAGcatttcaaagctgaattttcagtttGTGTGGTGCGGAACGTTTAATTTTCTCCGCGACATTTTGAACGTGACAGTGGGGATGTTTGGTTCATCACTGCAGGTCAGAAAATGAAATGTCCGATTAATAGAGCTTAAATGTCATTTTGTCGCGTATAAAGTTAACTTATCACCTGTAATAAACTTGACAATGACCGTTAATGTTAGCAAATGTGACATAAAAGGCTGTCTTACCTCGTTTTTACTGAGCTTCCCGGCTGTTTTGCGGGTCTCGTATCCATCAAGGCCGACGCCATAAAAGATGGGCCACATGTGGGCACTGCAGAAAGAATGGAGGGATGCTGGTGAAACGCACGGGTGGATGTTCAGTTCGAGATCCATCAATACGCCTGTCCCGTCTCCACCTGTAGAAGTCCGAGCACAGCCGAGTGCTCTCCCAGCTTCATCCTTCTCTGCGTGGACAAGCTCACATTCTTTGCCAGACGTAAAATGCACCATGAAGGCTCTCGGGATTCCTCCATATGCCAAGCATGTGATTTTGTCAAGGAGCACCCAGCCACTGCACTGTGAACCCTTGTGTGCCGTCTCCGGCAGGACACCTCCCTACGCTGAGCTCTTTCATGTTTGTGAAGTCTGATGGCGGGACGTGTGTGAGCGTGAAGAGGTCACGACTAGGAAGGTCAGGCTGCATGGGGTGTTTCTTTCTCCCTTAAACCTCAATACACAGAGACTATTAACTCCTCACTACAAACAAACCAGGGGTCACGAGCTGGCAGATCGAAGAAACTGAGCTGACTTGGGATAATTTTTTGTCACCTGATAAGAGCTGATAAGGGCTTGTGACAGATGCTAGATATTGTTATTTGTTTGAGtgtcgataaaaaaaaaaatcagacactatgcatatgtatctatgtatgtactgtatgtatagtgAATGTGTATCACAGTCAACATTTTTTTGTAGTGggtcaaaataaattatatacacaAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044996 False 601 lncRNA 0.45 2 20858313 20864324
TCONS_00044997 True 1264 lncRNA 0.43 3 20858313 20938578

Neighbor

gene id symbol gene type direction distance location
XLOC_022314 NA coding downstream 21709 20829345 ~ 20836604 (-)
XLOC_022313 znf362b coding downstream 94086 20738382 ~ 20764227 (-)
XLOC_022312 NA coding downstream 339462 20517609 ~ 20518851 (-)
XLOC_022311 taf13 coding downstream 428572 20428839 ~ 20429741 (-)
XLOC_022310 NA coding downstream 436740 20419133 ~ 20421573 (-)
XLOC_022316 NA coding upstream 65628 21004206 ~ 21007954 (-)
XLOC_022317 megf6a coding upstream 181014 21119592 ~ 21215520 (-)
XLOC_022318 her12 coding upstream 506344 21444922 ~ 21446985 (-)
XLOC_022319 her4.1 coding upstream 513979 21452557 ~ 21453614 (-)
XLOC_022320 her4.4 coding upstream 523443 21462021 ~ 21463788 (-)
XLOC_022307 NA non-coding downstream 503389 20348459 ~ 20354924 (-)
XLOC_022295 NA non-coding downstream 912891 19944173 ~ 19945422 (-)
XLOC_022324 NA non-coding upstream 708124 21646702 ~ 21649875 (-)
XLOC_022325 NA non-coding upstream 715696 21654274 ~ 21695061 (-)
XLOC_022326 CR548634.1 non-coding upstream 745198 21683776 ~ 21692423 (-)
XLOC_022332 NA non-coding upstream 1201199 22139777 ~ 22151790 (-)

Expression


Co-expression Network