XLOC_022320 (her4.4)


Basic Information

Item Value
gene id XLOC_022320
gene name her4.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 21462021 ~ 21463788 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044056
CACAGCTCAGATCTGATCCTGACGGAGAACTGAACACAAGACACACAGCAATGACTCCTACAATCACTGGATCAATCAGCAGCAGAGAAACTCTACTGACAAACAAGCTGAGAAAGCCCATGGTGGAGAAGATCCGCCGAGAGCGAATCAACAGCAGCATCGAGAAGCTCAAGACTCTTCTGGCTCAAGAGTTCGTCAAGCAGCAGCCCGACTCCAGACAGGAGAAAGCTGATATCCTGGAGATGACGCTTGATTTCTTGAGACGCTCTCAGAAAAGCAGTGCGGCTGGTGACGGACGCTCCAGATGTGTGCAGGAGGCCGTCAGCTTTCTGTCTCAGTGCCCAGTGCAGACGCAGAGCCACACAAGACTGATGAAGCTCTTCCTGCACATGCAGACTCCTGCAGACCAGCACACACGTGTGGACAATCCTCAGACCACTGAAAAACACGCAAACAGCAGCGCCAAACAACACACTCCAGCCCGCAGTCACATCTGGAGACCCTGGTAGAGCTCAGAGCACCCGCCGTACCATTGAGAAAACACGAGTCACGATGCCAGTCTGAGATTGGCATGGACTGAAGTTCAGAAAGTAGGAATTGATTTCCGCCTCTGCAGCTTCTGCAGGACATTTAATCtgctttcagagaaagagagTTTAGTGAAACTGTGTGAGCAGTCATGTTTGATCTCAATGCACACAATCATCTGCTGTGTAGAATGATTATTACAGTGCATTTGTGAAAATTAACATTCAGTAGAAACTTTAAAGTCTGATTCAGACATTTGAGCATTTCACCCATATTGGGTTTGTTTTCTCTTCATCTATACGATGACCACACTGCTTTAGTTCACTGAAAACACTTGATTTAGATTTCTGCTATTTGAAATGCATCTTATCTTTTCTTATAATATAAGAAACACTTCTTCAGTTGAAAGATTTATTTGTGTGTTGAAGCACAAatgattgtttttaatgtttgcatgtGTTTACATGTAGGAGACTTTTCCCCTGTAAAGGGCAGATCAGTGTTTTCACTGTTAGTCAAGAATTTCACTTTTATATGTAAAGTCATTTTCTTACCTTCATTGAAGGATTCTTGCTCTGCATGTAAAGGATGACCACACTGCTTTCATTTACTGAAAGTGCTTTACttcttatttcttttgtttgaaataatttcATCTTCTCTTATTGTTAGAGaaaaatttcttcatttgaaGGAATTGTTTGTGTGTTGAAGCACAaatgattgttttattgtttttatgtgacaaaaatgttttatgtgaaaGAATTTGTCTTTTATATGCAGTCATGATCTTACCTTCATTGAAGGTTCTTGCTCTGCATGTAAAGGATGATCACGCTACTTTCTTTTATAGaaagtgctttatttttatttctattgtttgAAATACATCTGATTTTCTCTTATTGTTAGAGAAATATATCTTCATTTGAaagatttttttgtgttgaagcacaaatgattgttttaaatgtttacatgAAGAAGACTTTTCCCCTGTAAAGGGCAGCTCAATGTTTTCACTGTTAGTGATTTACAAATGTatcttttatgtttaaagtcTTGTTTTTACCTTCTCTGAAGGTGTTTTCTGTTCATTACTTCTTATTGAAGtacaacatgaaaataaattaacatatttt

Function

symbol description
her4.4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within peripheral nervous system neuron axonogenesis. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-104 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within peripheral nervous system neuron axonogenesis. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000009822

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044056 True 1673 mRNA 0.39 2 21462021 21463788

Neighbor

gene id symbol gene type direction distance location
XLOC_022319 her4.1 coding downstream 8407 21452557 ~ 21453614 (-)
XLOC_022318 her12 coding downstream 15036 21444922 ~ 21446985 (-)
XLOC_022317 megf6a coding downstream 246501 21119592 ~ 21215520 (-)
XLOC_022316 NA coding downstream 454067 21004206 ~ 21007954 (-)
XLOC_022315 NA coding downstream 523443 20858313 ~ 20938578 (-)
XLOC_022321 her4.2 coding upstream 5415 21469203 ~ 21471022 (-)
XLOC_022322 rnf207b coding upstream 35797 21499585 ~ 21515182 (-)
XLOC_022323 rcc2 coding upstream 56981 21520769 ~ 21535040 (-)
XLOC_022324 NA coding upstream 182914 21646702 ~ 21649875 (-)
XLOC_022325 NA coding upstream 190486 21654274 ~ 21695061 (-)
XLOC_022314 NA non-coding downstream 625417 20829345 ~ 20836604 (-)
XLOC_022312 NA non-coding downstream 943170 20517609 ~ 20518851 (-)
XLOC_022310 NA non-coding downstream 1040448 20419133 ~ 20421573 (-)
XLOC_022326 CR548634.1 non-coding upstream 219988 21683776 ~ 21692423 (-)
XLOC_022332 NA non-coding upstream 675989 22139777 ~ 22151790 (-)
XLOC_022333 NA non-coding upstream 748337 22212125 ~ 22216128 (-)

Expression


Co-expression Network