XLOC_022323 (rcc2)


Basic Information

Item Value
gene id XLOC_022323
gene name rcc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 21520769 ~ 21535040 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044060
ATGATCTGTACTGTACACTGCTTGCTTActacttttattttgcttttttgtaggatttggaatATGCCACGCAAGAAGGTGACAGATGTGTCTGGGAACGGTGGATTGAAGAGGAAAAGAGGAGGtggaaagaaaaaggaaagagaGTTCAGCAGTGATGATGAGTTTGATGACTATGAACAGGAAAACACAAAGAAACCTGGAAAACCAGCAGCTAAAGCGGGTTTGCAACCGGTCACTGTCGCTGATGATGTGAAGGAGAAGATTAAACTCGAGGTTCCCAAAGTTAAAGGTCAGCTGCTCATTTTTGGGGCCACCAACTGGGACCTGATTGGCAGAAAAGAAGTGCCAAAACAGCAAGctgctTTCAGGAACCTTGGTCAGAATCTGTGGGGTCCACATCGCTATGGATGCCTCAGTGATGTCCAGGTTAGTTGTGTGGTATCTGGACCCTGCGCTGCCCACAGTCTCATCATCACCACAGAAGGCAAACTCTGGAGCTGGGGTCGTAATGATAAAGGACAGCTGGGTCATGGAGACACTAAACGATTGGAGGCCCCAAAACTGATTGAGGGCCTGGGGGAGGAAGTGATTGTAGCAGCTGCTTGTGGTAGAAACCACACCTTGGCTTTAACAGAAAATGGTACTGTCTACACCTTTGGAGAAAACAAACTGGGGCAGCTAGGCCAGGGGAATCAGACAGATGCAGTGCTCAGCCCAGCTACAATCCAGTACAACGGGCAGCCGATAGTCAAAGTGGCCTGTGGAGCAGAGTTCAGTATGATCGTGGACTGCAAGGGGAATCTATACTCTTTTGGCTGCCCAGAATATGGACAACTTGGGCATAACTCTGATGGAAAGTTCATTGCTCGTGCCCAGCGCATTGAATTCGACTGTGAGCTGATCCCTAGACGGGTGGCCATTTTTATTGAGAAGACCAAGGATGGCCAAGTGCTTCCTGTGCCCAATGTTGTGGCCCGGGATGTAGCATGTGGCGCTAATCACACGCTGGTGTTGGATTCTCAAAAGCGTGTGTTTTCGTGGGGATTTGGTGGTTATGGACGTCTAGGCCATGCTGAACAGAAAGATGAAATGGTCCCACGGTTAGTCAAGCTGTTTGACTTCCCAGGCCGTGGTGCAACTCAGATATACTGTGGATATCAGTGTTCCTTTGCTTTGAGTGAAATGGGCGGCCTGTTTTTCTGGGGCGTGACAAACACGTCCCGTGAGTCCACCATGTACCCTAAAGCTGTACAGGACCTGTGCGGATGGAAGATTCGCAGTTTGGCCTGTGGGAAGAGCAGTATTATCGTAGCAGCTGACGACAGCACTATTAGCTGGGGACCATCACCCACATTCGGAGAGCTGGGCTATGGTGACAACAAACCCAAGTCATCCACCACTGCCCAAGAGGTCAAAACTCTGGATGGCGTGTATTCCGAGCAGgtggtGATGGGCTATTCGCACTCCCTGGTTATTGCTCGGCAAGACACAGAGCAAGAGAAGGAGAAGCTGAAGAAGCTGCCTGAATACAATCCACGCACTCTCTGATGTGACCCCGCTCATTTCCTCCAGGGGCTTTTTGAAAGGAAATCCTCTGCTCGATAGGTCACCTGGGTAATCACAGTATGGTTGGGATGGGATTGTTTATTTTTCCTATATATTTTGGACatcaatttactttttttgagagACAAGCCACGTGTCGGATGAAAGTTTTGAAGTTGCGTTAACTGATCTGCGTAGGCCGTGGCGTTTCAGATgctaaatgttttaatttcacaATACAGCCAGCAGCCGCTCAAAGCACTCGGATTCCACTGGATCCTTTCCTTTTACTTATACATTCCTAATGGAAGTTTATcacttattgttttgtttgtttgtttttccataACGATGACTGTGAGATCCGTGTCTGCTCtcttccaaaaaacaaaacaaactggtGCTAAATCGTTTTAATGCAGACTATCAATGGGCTAGCGGTTAACTAAAAGATGACAAACTCACTCCATTCTTGTGCCTTTCTAAGTGAGGTGATTCAGGCTGAAGAAGTTCAGTTAGTCCTAGGACAACTCATGCATTATGGGGCACTTCATTCTTCTGAACATCACTTCCATCTCCGTTATATCATTATCATCAAATATAAGATCGTCATTTTCCACGCCATATAGCTAATCAGTAAGTTGTTCCAGGATTTTTTCCCCCCTCTACCCCCTCCCTTCATCCATATTTAAAAGACAGACTCCTGTTAATCTGATCAGGGAAGTATTATCAACTCCTACAATGCAAATGAGACATCAGCTGTGAgatttttattcaattcattcTCCCTTTTCTAGAAATGTAAGTCATTAATGTTCATCGCTTGTATTGTAAACTACAGAAATGCTGTTCTCACGTGTTGATGTAAGCATGTTTTGGAAACTTTTTGGACTTGATGTTGAGAAGAGTAGGATTGTCCTGTAATCTGGGACCACAGTGTCTTTACAGAGCATCATTTTATAAAATACTGTGCCATTTCTTTGTTCACCTGGGCTTAAACTGTGatcacatttttttctttcatcatCTGAAAGTCCATGCAAGAGTCCATCCACTGTTTGTGGGTGAGTGACAAGCTCATGTGTGTTATGTTGTATGCAAACCGCAGTTTTAAATTGTGTACTTAAAAGAAATGTTCATTGGTTTAGGCAGCGTGTTTCCAGAAACTGGAATTCCAActcatgttttgattttcttaaatgttattttgttttcttaatattaaataaaagttaatgtaAATTGGTATTTGGTGctgttgtttttctttcattGTATGTTTTCATCTCCTAAGTAAAAGTTCAACCTACTTTCTAAATTTGTGAACCATTAATCTGTGTGCATGATTCTTTATTTCAAAGTTTTTTGTAATATTAGAGAGACATCCGTTATAATGTGTAGGCTTTTTCCAATTATCTTTACTTTTGATTACCCTATTTGTTATTTTTGGTAAATTGTTCCACTGGCTGCATGTCAGAAAATGGTAGACAACTTGTCATGATTTCATTGTGACTTTGTTTGACTTTACTCAAGTATTATGAGTAAAGGTCAAAGACATTTAATGTCTACAACAAATTGACATGTGGTTAATATTcatagaaagcatattaaatgcaagtatcgacttaaaaaaaaacaagaaaaaaatgacaatatgggtgaaatatttttttttttcattactgaACTTAATACTTGTAAAACTTCATGAATAAAACCTATTGGTTAAAATGGATTTATGTACATTGTGATTTTTAAATCATGCTCAAAATATGCGTAACTAATTTCTTTGAGGTAAATAAACGGTTACACTGTCTAAAATGTTAAGTGGGTGCCATGCTATAAATCATCATCAAAATATAGGATTTTCTCGttaacacttagctgatgattgattataaagcgagtttggcatgttgtccagggagaaagccctgagctcagaatatcctcaATACCCTCCTCTCATtggaagggcgagaggg
>TCONS_00044061
GAATCTCATCctcgtgtgtttgttttgtggacTACACGCTCACTGCCATGAAAGTTACATGAGTGCTTAAACTGTACATTTGGACCTAAATTTACTTAAGGAATACACAGAGGAGAAATACCTCTTACGCTTAACATCCAACGTGTCGATCCCATCATAACACAGgatttggaatATGCCACGCAAGAAGGTGACAGATGTGTCTGGGAACGGTGGATTGAAGAGGAAAAGAGGAGGtggaaagaaaaaggaaagagaGTTCAGCAGTGATGATGAGTTTGATGACTATGAACAGGAAAACACAAAGAAACCTGGAAAACCAGCAGCTAAAGCGGGTTTGCAACCGGTCACTGTCGCTGATGATGTGAAGGAGAAGATTAAACTCGAGGTTCCCAAAGTTAAAGGTCAGCTGCTCATTTTTGGGGCCACCAACTGGGACCTGATTGGCAGAAAAGAAGTGCCAAAACAGCAAGctgctTTCAGGAACCTTGGTCAGAATCTGTGGGGTCCACATCGCTATGGATGCCTCAGTGATGTCCAGGTTAGTTGTGTGGTATCTGGACCCTGCGCTGCCCACAGTCTCATCATCACCACAGAAGGCAAACTCTGGAGCTGGGGTCGTAATGATAAAGGACAGCTGGGTCATGGAGACACTAAACGATTGGAGGCCCCAAAACTGATTGAGGGCCTGGGGGAGGAAGTGATTGTAGCAGCTGCTTGTGGTAGAAACCACACCTTGGCTTTAACAGAAAATGGTACTGTCTACACCTTTGGAGAAAACAAACTGGGGCAGCTAGGCCAGGGGAATCAGACAGATGCAGTGCTCAGCCCAGCTACAATCCAGTACAACGGGCAGCCGATAGTCAAAGTGGCCTGTGGAGCAGAGTTCAGTATGATCGTGGACTGCAAGGGGAATCTATACTCTTTTGGCTGCCCAGAATATGGACAACTTGGGCATAACTCTGATGGAAAGTTCATTGCTCGTGCCCAGCGCATTGAATTCGACTGTGAGCTGATCCCTAGACGGGTGGCCATTTTTATTGAGAAGACCAAGGATGGCCAAGTGCTTCCTGTGCCCAATGTTGTGGCCCGGGATGTAGCATGTGGCGCTAATCACACGCTGGTGTTGGATTCTCAAAAGCGTGTGTTTTCGTGGGGATTTGGTGGTTATGGACGTCTAGGCCATGCTGAACAGAAAGATGAAATGGTCCCACGGTTAGTCAAGCTGTTTGACTTCCCAGGCCGTGGTGCAACTCAGATATACTGTGGATATCAGTGTTCCTTTGCTTTGAGTGAAATGGGCGGCCTGTTTTTCTGGGGCGTGACAAACACGTCCCGTGAGTCCACCATGTACCCTAAAGCTGTACAGGACCTGTGCGGATGGAAGATTCGCAGTTTGGCCTGTGGGAAGAGCAGTATTATCGTAGCAGCTGACGACAGCACTATTAGCTGGGGACCATCACCCACATTCGGAGAGCTGGGCTATGGTGACAACAAACCCAAGTCATCCACCACTGCCCAAGAGGTCAAAACTCTGGATGGCGTGTATTCCGAGCAGgtggtGATGGGCTATTCGCACTCCCTGGTTATTGCTCGGCAAGACACAGAGCAAGAGAAGGAGAAGCTGAAGAAGCTGCCTGAATACAATCCACGCACTCTCTGATGTGACCCCGCTCATTTCCTCCAGGGGCTTTTTGAAAGGAAATCCTCTGCTCGATAGGTCACCTGGGTAATCACAGTATGGTTGGGATGGGATTGTTTATTTTTCCTATATATTTTGGACatcaatttactttttttgagagACAAGCCACGTGTCGGATGAAAGTTTTGAAGTTGCGTTAACTGATCTGCGTAGGCCGTGGCGTTTCAGATgctaaatgttttaatttcacaATACAGCCAGCAGCCGCTCAAAGCACTCGGATTCCACTGGATCCTTTCCTTTTACTTATACATTCCTAATGGAAGTTTATcacttattgttttgtttgtttgtttttccataACGATGACTGTGAGATCCGTGTCTGCTCtcttccaaaaaacaaaacaaactggtGCTAAATCGTTTTAATGCAGACTATCAATGGGCTAGCGGTTAACTAAAAGATGACAAACTCACTCCATTCTTGTGCCTTTCTAAGTGAGGTGATTCAGGCTGAAGAAGTTCAGTTAGTCCTAGGACAACTCATGCATTATGGGGCACTTCATTCTTCTGAACATCACTTCCATCTCCGTTATATCATTATCATCAAATATAAGATCGTCATTTTCCACGCCATATAGCTAATCAGTAAGTTGTTCCAGGATTTTTTCCCCCCTCTACCCCCTCCCTTCATCCATATTTAAAAGACAGACTCCTGTTAATCTGATCAGGGAAGTATTATCAACTCCTACAATGCAAATGAGACATCAGCTGTGAgatttttattcaattcattcTCCCTTTTCTAGAAATGTAAGTCATTAATGTTCATCGCTTGTATTGTAAACTACAGAAATGCTGTTCTCACGTGTTGATGTAAGCATGTTTTGGAAACTTTTTGGACTTGATGTTGAGAAGAGTAGGATTGTCCTGTAATCTGGGACCACAGTGTCTTTACAGAGCATCATTTTATAAAATACTGTGCCATTTCTTTGTTCACCTGGGCTTAAACTGTGatcacatttttttctttcatcatCTGAAAGTCCATGCAAGAGTCCATCCACTGTTTGTGGGTGAGTGACAAGCTCATGTGTGTTATGTTGTATGCAAACCGCAGTTTTAAATTGTGTACTTAAAAGAAATGTTCATTGGTTTAGGCAGCGTGTTTCCAGAAACTGGAATTCCAActcatgttttgattttcttaaatgttattttgttttcttaatattaaataaaagttaatgtaAATTGGTA
>TCONS_00044062
AAAGCCCTGAGTGTGCGCTGCACCCACGTGGTTTGATCGCGAGGCTGCGAGTCTTTTGTTCCGAATCAATCAAAAAAACGAGGAAGACGGACAGACATAAGTAGAGCATCTGAATCAGGAAATCTACTTATATAATAACCGCATCTTCCAGCACAACAGACCAAGCCGCAGCCTCTTAACTTGACACATTTATACTCCTACaactttaatatttgtatttaaagtaTAAAGAGGAAAGTTTAACTCAGgatttggaatATGCCACGCAAGAAGGTGACAGATGTGTCTGGGAACGGTGGATTGAAGAGGAAAAGAGGAGGtggaaagaaaaaggaaagagaGTTCAGCAGTGATGATGAGTTTGATGACTATGAACAGGAAAACACAAAGAAACCTGGAAAACCAGCAGCTAAAGCGGGTTTGCAACCGGTCACTGTCGCTGATGATGTGAAGGAGAAGATTAAACTCGAGGTTCCCAAAGTTAAAGGTCAGCTGCTCATTTTTGGGGCCACCAACTGGGACCTGATTGGCAGAAAAGAAGTGCCAAAACAGCAAGctgctTTCAGGAACCTTGGTCAGAATCTGTGGGGTCCACATCGCTATGGATGCCTCAGTGATGTCCAGGTTAGTTGTGTGGTATCTGGACCCTGCGCTGCCCACAGTCTCATCATCACCACAGAAGGCAAACTCTGGAGCTGGGGTCGTAATGATAAAGGACAGCTGGGTCATGGAGACACTAAACGATTGGAGGCCCCAAAACTGATTGAGGGCCTGGGGGAGGAAGTGATTGTAGCAGCTGCTTGTGGTAGAAACCACACCTTGGCTTTAACAGAAAATGGTACTGTCTACACCTTTGGAGAAAACAAACTGGGGCAGCTAGGCCAGGGGAATCAGACAGATGCAGTGCTCAGCCCAGCTACAATCCAGTACAACGGGCAGCCGATAGTCAAAGTGGCCT
>TCONS_00044063
CTTCGGATGCAAATGCAGTGTAGCATGCTAACACGGCTACGTCTGCATCGTACACATCTGTAAACGTTATGTCTTTCGAATGAACTAAGTTTACGGCTTGGGCTGTTTTAACGGGACAGGGCAGATATATAACACGTGGgatttggaatATGCCACGCAAGAAGGTGACAGATGTGTCTGGGAACGGTGGATTGAAGAGGAAAAGAGGAGGtggaaagaaaaaggaaagagaGTTCAGCAGTGATGATGAGTTTGATGACTATGAACAGGAAAACACAAAGAAACCTGGAAAACCAGCAGCTAAAGCGGGTTTGCAACCGGTCACTGTCGCTGATGATGTGAAGGAGAAGATTAAACTCGAGGTTCCCAAAGTTAAAGGTCAGCTGCTCATTTTTGGGGCCACCAACTGGGACCTGATTGGCAGAAAAGAAGTGCCAAAACAGCAAGctgctTTCAGGAACCTTGGTCAGAATCTGTGGGGTCCACATCGCTATGGATGCCTCAGTGATGTCCAGGTTAGTTGTGTGGTATCTGGACCCTGCGCTGCCCACAGTCTCATCATCACCACAGAAGGCAAACTCTGGAGCTGGGGTCGTAATGATAAAGGACAGCTGGGTCATGGAGACACTAAACGATTGGAGGCCCCAAAACTGATTGAGGGCCTGGGGGAGGAAGTGATTGTAGCAGCTGCTTGTGGTAGAAACCACACCTTGGCTTTAACAGAAAATGGTACTGTCTACACCTTTGGAGAAAACAAACTGGGGCAGCTAGGCCAGGGGAATCAGACAGATGCAGTGCTCAGCCCAGCTACAATCCAGTACAACGGGCA

Function

symbol description
rcc2 Involved in neural crest cell migration. Predicted to be located in several cellular components, including chromosome, centromeric region; midbody; and spindle. Orthologous to human RCC2 (regulator of chromosome condensation 2).

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0005819 spindle cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0030496 midbody cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0016020 membrane cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2213 Involved in neural crest cell migration. Predicted to be located in several cellular components, including chromosome, centromeric region; midbody; and spindle. Orthologous to human RCC2 (regulator of chromosome condensation 2).

Ensembl:

ensembl_id ENSDARG00000011510

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044060 False 3533 mRNA 0.42 12 21520769 21533949
TCONS_00044061 False 2908 mRNA 0.44 13 21521506 21535040
TCONS_00044062 False 958 mRNA 0.47 7 21526661 21534738
TCONS_00044063 True 829 mRNA 0.48 7 21526681 21534455

Neighbor

gene id symbol gene type direction distance location
XLOC_022322 rnf207b coding downstream 5587 21499585 ~ 21515182 (-)
XLOC_022321 her4.2 coding downstream 49747 21469203 ~ 21471022 (-)
XLOC_022320 her4.4 coding downstream 56981 21462021 ~ 21463788 (-)
XLOC_022319 her4.1 coding downstream 67155 21452557 ~ 21453614 (-)
XLOC_022318 her12 coding downstream 73784 21444922 ~ 21446985 (-)
XLOC_022324 NA coding upstream 111662 21646702 ~ 21649875 (-)
XLOC_022325 NA coding upstream 119234 21654274 ~ 21695061 (-)
XLOC_022326 CR548634.1 coding upstream 148736 21683776 ~ 21692423 (-)
XLOC_022327 vps13d coding upstream 161520 21696560 ~ 21763598 (-)
XLOC_022328 lrrc38a coding upstream 240396 21775436 ~ 21797517 (-)
XLOC_022316 NA non-coding downstream 512815 21004206 ~ 21007954 (-)
XLOC_022315 NA non-coding downstream 582191 20858313 ~ 20938578 (-)
XLOC_022314 NA non-coding downstream 684165 20829345 ~ 20836604 (-)
XLOC_022312 NA non-coding downstream 1001918 20517609 ~ 20518851 (-)
XLOC_022310 NA non-coding downstream 1099196 20419133 ~ 20421573 (-)
XLOC_022332 NA non-coding upstream 604737 22139777 ~ 22151790 (-)
XLOC_022333 NA non-coding upstream 677085 22212125 ~ 22216128 (-)

Expression


Co-expression Network