RNA id: TCONS_00044062


Basic Information

Item Value
RNA id TCONS_00044062
length 958
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_022323
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 21520769 ~ 21535040 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGCCCTGAGTGTGCGCTGCACCCACGTGGTTTGATCGCGAGGCTGCGAGTCTTTTGTTCCGAATCAATCAAAAAAACGAGGAAGACGGACAGACATAAGTAGAGCATCTGAATCAGGAAATCTACTTATATAATAACCGCATCTTCCAGCACAACAGACCAAGCCGCAGCCTCTTAACTTGACACATTTATACTCCTACaactttaatatttgtatttaaagtaTAAAGAGGAAAGTTTAACTCAGgatttggaatATGCCACGCAAGAAGGTGACAGATGTGTCTGGGAACGGTGGATTGAAGAGGAAAAGAGGAGGtggaaagaaaaaggaaagagaGTTCAGCAGTGATGATGAGTTTGATGACTATGAACAGGAAAACACAAAGAAACCTGGAAAACCAGCAGCTAAAGCGGGTTTGCAACCGGTCACTGTCGCTGATGATGTGAAGGAGAAGATTAAACTCGAGGTTCCCAAAGTTAAAGGTCAGCTGCTCATTTTTGGGGCCACCAACTGGGACCTGATTGGCAGAAAAGAAGTGCCAAAACAGCAAGctgctTTCAGGAACCTTGGTCAGAATCTGTGGGGTCCACATCGCTATGGATGCCTCAGTGATGTCCAGGTTAGTTGTGTGGTATCTGGACCCTGCGCTGCCCACAGTCTCATCATCACCACAGAAGGCAAACTCTGGAGCTGGGGTCGTAATGATAAAGGACAGCTGGGTCATGGAGACACTAAACGATTGGAGGCCCCAAAACTGATTGAGGGCCTGGGGGAGGAAGTGATTGTAGCAGCTGCTTGTGGTAGAAACCACACCTTGGCTTTAACAGAAAATGGTACTGTCTACACCTTTGGAGAAAACAAACTGGGGCAGCTAGGCCAGGGGAATCAGACAGATGCAGTGCTCAGCCCAGCTACAATCCAGTACAACGGGCAGCCGATAGTCAAAGTGGCCT

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0005819 spindle cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0030496 midbody cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0016020 membrane cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2213 Involved in neural crest cell migration. Predicted to be located in several cellular components, including chromosome, centromeric region; midbody; and spindle. Orthologous to human RCC2 (regulator of chromosome condensation 2).

Ensembl:

ensembl_id ENSDART00000134587

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044998 lncRNA downstream 518707 21004206 ~ 21007954 (-) True XLOC_022316
TCONS_00044997 lncRNA downstream 588083 20858313 ~ 20938578 (-) True XLOC_022315
TCONS_00044996 lncRNA downstream 662337 20858313 ~ 20864324 (-) False XLOC_022315
TCONS_00044995 lncRNA downstream 690057 20829345 ~ 20836604 (-) True XLOC_022314
TCONS_00044994 lncRNA downstream 696710 20829345 ~ 20829951 (-) False XLOC_022314
TCONS_00044999 lncRNA upstream 111964 21646702 ~ 21649875 (-) True XLOC_022324
TCONS_00045000 lncRNA upstream 119536 21654274 ~ 21695061 (-) True XLOC_022325
TCONS_00044064 lncRNA upstream 149038 21683776 ~ 21692423 (-) True XLOC_022326
TCONS_00044733 lncRNA upstream 605039 22139777 ~ 22151790 (-) True XLOC_022332
TCONS_00045001 lncRNA upstream 677387 22212125 ~ 22216128 (-) True XLOC_022333
TCONS_00044059 mRNA downstream 11479 21500218 ~ 21515182 (-) True XLOC_022322
TCONS_00044057 mRNA downstream 55639 21469203 ~ 21471022 (-) True XLOC_022321
TCONS_00044056 mRNA downstream 62873 21462021 ~ 21463788 (-) True XLOC_022320
TCONS_00044055 mRNA downstream 73047 21452557 ~ 21453614 (-) True XLOC_022319
TCONS_00044054 mRNA downstream 79676 21444922 ~ 21446985 (-) True XLOC_022318
TCONS_00044065 mRNA upstream 161822 21696560 ~ 21748805 (-) False XLOC_022327
TCONS_00044066 mRNA upstream 162053 21696791 ~ 21758253 (-) False XLOC_022327
TCONS_00044067 mRNA upstream 215689 21750427 ~ 21763598 (-) True XLOC_022327
TCONS_00044068 mRNA upstream 240698 21775436 ~ 21797517 (-) True XLOC_022328
TCONS_00044069 mRNA upstream 268672 21803410 ~ 21946603 (-) False XLOC_022329
TCONS_00044058 other downstream 12315 21499585 ~ 21514346 (-) False XLOC_022322
TCONS_00044044 other downstream 1188064 20325741 ~ 20338597 (-) True XLOC_022305
TCONS_00044043 other downstream 1198039 20325698 ~ 20328622 (-) False XLOC_022305
TCONS_00044031 other downstream 1400450 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044082 other upstream 1108666 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044083 other upstream 1108926 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044084 other upstream 1328719 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044095 other upstream 2613600 24148338 ~ 24167317 (-) False XLOC_022346
TCONS_00044112 other upstream 2908444 24443182 ~ 24444254 (-) False XLOC_022355

Expression Profile

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