XLOC_022346 (arhgef19)


Basic Information

Item Value
gene id XLOC_022346
gene name arhgef19
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24140043 ~ 24167350 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044093
GAATACAGTGACGTTGCCATCAACAGGGAGATACAGAGGCAACAAGGGGCAGAGCCAGGAACCGATGAAGAAAGAGGGGAGTCTGTGTCTCCTGGAAACCTCTCCCCATCCAGCTCATTCCGCTCATCACGAGGCTCGGCCTTTTCCTTATGGCAAGATATTCCTGATGTTCGATCAAGTGGACAACTTGACAATTTCAGCAATGAAGAGCGTAAACTACAGGAGGCAAAGTTTGAGTTGGTGACATCAGAGGCCTCATACATACGGAGCTTGTCTATTGCAGTTGACCATTTTATGATGTCTTCTGAGCTATGCGAGTGTCTTGGGACACAGGAGAGGCAGTGGCTCTTCTCCAAACTGCCTGACGTGAAAGAAGTCAGTGAGAGGTTCCTTCAAGATTTGGAGCGTAGGTTAGAAGGAGACATTTTACGGTTCGACGTGTGTGACATTGTCCTTGACCACTGTCCTGCACTGAGGAGGGTTTATCTGCCTTATGTCACCAATCAGGCCTACCAGGAACAGACCTATCAGCGACTACTGCAAGAGAATGCCCGGTTCCCTGGGATCCTTGCCCGCCTGGAAGAGGACCCAATATGCCAGAGGCTGCCTCTTACATCATTTCTCATTCTTCCTTTTCAAAGAATCACACGCCTCAAAATGCTAGTGGAGAATATCTTAAAGAGAACAACGCCTGGGTCACGAGATGAGGACACTGCCACCAAAGCACTTAATGAGCTCAAAAAGATTATAAAGGAATGTAACTCCAGTGTCCAGTCCATGAAGAGAATGGAAGAACTAATTCACCTAAACAAGAAAATTCACTTTGAGGGCAAGATTTTCCCTCTCATCTCTCAGTCTCGCTGGCTGGTCAAACATGGTGAACTGCTAGAAGTAGACACACAGAATTTGAGTATATCTGGATCTAAGTTTAAGCTTACCACCCGGCCAGTGTACCTGCACCTGTTTAATGACTGTCTTCTACTTTCCCGAAGGAAGGAGTCGTGGAAGTTCATGGTGTTCGTACATGCAAAAATTGAAGACCTCAAGGTGAAAGACCTAAGCCAGAAACTTCAGGGAATCTCAGGCTTCATCTTCTATCTGCAGTTATGTGAGGGGCAACAGCTAAAACACCAAATTCTGCTCAAATCACCCACAGAGAGCAGCAAACAGAGGTGGATCACAGCCATGTTTCCCTCCGATCCAACGACAGCTATAGAGCAGACCAATGAGAATGATGATCTATCTCAGGTCCAGTGTATCAGGAGCTACCAGGCTCAAGAGCATGATGAGTTAACGCTGGAGAAGGCAGACATCCTTCAAGCTGTAACAATTACAAGTGATGGGTGGGTAGAGGGGATTCGGTTGTCGGATGGAGAGAGGGGCTGGTTCCCTAAAACGTACGTGGAGGAGATCACAAGCCGCAGTGCTCGTTTGCGAAACCTCCGTGAAAACATTCGCATCAAGTGTGTCTCACAGAAATTAGAGGGAGAGACTCTCTGAGACCTTAAAGTATGGGacattgttttactttacac
>TCONS_00044094
ATGCTTCCTGGCTATGGAATCTCTCCTCTTCTTGATTTCCAGCCTCACCTCCAAGCGTTCCATTGCAGAGGCGAGAGCTCTGACATGTGGTTCCCAGGCTCAGTTGAGACCCAGGCACTGAGCGATTCTCGGGAAGGAAGGCCTCTCCTGCGGCAGCACCAACACATTGCTGTGTGTCAGCAAGAGACATTGGCCTTCATTGACCTTCAAGAGCAAAGTGTTAATGGTTTCCAATCATGCACATCAGAAAACTGTAGTTCCTCTCTTTGCTCCAAGCCTCTCAGATGCAATGGAAGGAGTCCATCTGACTTTGCCAAGACTGAGAGTACAGACAGAGCACTAGACGATTATTTGACAGAGGATATCAATAATGTGGAAGTGGTTCAGGAACAGTCATGGACATACATTACTGGCTTACCTGAGACAGTTCATGAAAATCCTGATTCAGGAGTTAAGGGTCTCAATCCTCGGAATTTATTTCTGCCTTTGTCCCCTATATATGCACCTGGAGACAGGAACTCTTTGGAGTCTCAGCAGCTAAGCTCCCCCTCTTCCCCTTTAGAGGGTCCAGACCCATTTCGCCCTCAAAGACGCACCTCTTTGGGATCAATAAAAGAGAAGTCTATAAGGCGTAAGATGAGGGTGTATTCTCCTGACACTCTAGAAGCGTCTCCCAGCAGCCCAGGTGTAGAGTGTGATTATCTGCTTCCAGCATCCTTTGAGTCATTCGTAGAAGGAGGGCTTGGCATGGTGGGATCTACCATACCCACATCCCAGACTTCCAGCCCCCTTCCAGGCTTAGACGAAGACCTCTCTCTTTTTGCCATACCAAACTCTCCAAAACCTTTCTTAAATCCCCTTCAGGAGGGTGCCAGATGCCAAGAGGGTGTAAATGACGAGGGGAGGCAGAGGTTAGGCCTGGAGGATTGTGGAACTTTGCAAGGCCCTCCCCTCAACAGTGGCACCTCGATGCCTCTGTCCCGTTCTCGTTCAGTAGACAATGAGCGCCGGCGCTTCTCTGCTTCTGAGCTCATCTCTCGCCTTCAACTCTCTCAGAGGAAAAACTCCTTTACACTTAAGCTGGGCAAGTCTCTCTCTGCTCGCGTGGCCTCCCGGGAACGCCACCTGTCTGGAAACCTCAGCTCAGACTACAAACCCAACTCCAGACATCGCTTCTCAGGGGGATCAAGTGACAGTGGACCACATAGTCCGGTGGGGTCTGCACCACCACTGCCCTCTGCTGACAGTAATCAGCCACTGCACCGAAGGAGCTCTAAGCAAAGAATGAGAAAAGTTTCTGTTGATGAGGATGGAGGCAGCCCTCCCAGTAACTCTAAACGTCTTTCGCGTTTCTTGCCAAGCTTGATTTTGTATCAGGAATACAGTGACGTTGCCATCAACAGGGAGATACAGAGGCAACAAGGGGCAGAGCCAGGAACCGATGAAGAAAGAGGGGAGTCTGTGTCTCCTGGAAACCTCTCCCCATCCAGCTCATTCCGCTCATCACGAGGCTCGGCCTTTTCCTTATGGCAAGATATTCCTGATGTTCGATCAAGTGGACAACTTGACAATTTCAGCAATGAAGAGCGTAAACTACAGGAGGCAAAGTTTGAGTTGGTGACATCAGAGGCCTCATACATACGGAGCTTGTCTATTGCAGTTGACCATTTTATGATGTCTTCTGAGCTATGCGAGTGTCTTGGGACACAGGAGAGGCAGTGGCTCTTCTCCAAACTGCCTGACGTGAAAGAAGTCAGTGAGAGGTTCCTTCAAGATTTGGAGCGTAGGTTAGAAGGAGACATTTTACGGTTCGACGTGTGTGACATTGTCCTTGACCACTGTCCTGCACTGAGGAGGGTTTATCTGCCTTATGTCACCAATCAGGCCTACCAGGAACAGACCTATCAGCGACTACTGCAAGAGAATGCCCGGTTCCCTGGGATCCTTGCCCGCCTGGAAGAGGACCCAATATGCCAGAGGCTGCCTCTTACATCATTTCTCATTCTTCCTTTTCAAAGAATCACACGCCTCAAAATGCTAGTGGAGAATATCTTAAAGAGAACAACGCCTGGGTCACGAGATGAGGACACTGCCACCAAAGCACTTAATGAGCTCAAAAAGATTATAAAGGAATGTAACTCCAGTGTCCAGTCCATGAAGAGAATGGAAGAACTAATTCACCTAAACAAGAAAATTCACTTTGAGGGCAAGATTTTCCCTCTCATCTCTCAGTCTCGCTGGCTGGTCAAACATGGTGAACTGCTAGAAGTAGACACACAGAATTTGAGTATATCTGGATCTAAGTTTAAGCTTACCACCCGGCCAGTGTACCTGCACCTGTTTAATGACTGTCTTCTACTTTCCCGAAGGAAGGAGTCGTGGAAGTTCATGGTGTTCGTACATGCAAAAATTGAAGACCTCAAGGTGAAAGACCTAAGCCAGAAACTTCAGGGAATCTCAGGCTTCATCTTCTATCTGCAGTTATGTGAGGGGCAACAGCTAAAACACCAAATTCTGCTCAAATCACCCACAGAGAGCAGCAAACAGAGGTGGATCACAGCCATGTTTCCCTCCGATCCAACGACAGCTATAGAGCAGACCAATGAGAATGATGATCTATCTCAGGTCCAGTGTATCAGGAGCTACCAGGCTCAAGAGCATGATGAGTTAACGCTGGAGAAGGCAGACATCCTTCAAGCTGTAACAATTACAAGTGATGGGTGGGTAGAGGGGATTCGGTTGTCGGATGGAGAGAGGGGCTGGTTCCCTAAAACGTACGTGGAGGAGATCACAAGCCGCAGTGCTCGTTTGCGAAACCTCCGTGAAAACATTCGCATCAAGTGTGTCTCACAGAAATTAGAGGGAGAGACTCTCTGA
>TCONS_00044095
cactcactgcTCTTTCTTTCTGCTTGGCAGGAAGAGTCTCCTCTGAACCAGACAACAGCTTGCACTTCTCTGCTTTTCCTCTGCTGGCAGGTGTTAGAAATAAAGCCATAAATAAGTGGACTTAAAGACAAcactacagagagagagagaggacaaaTGTCTTGCACAAGTGAGCAAGGGATATGAGGGGAAAAAGGAGAAGAAACCTGCATTTTTAGGTAGCTTGAATTGTTAGTAGgctttgctgttcagtttttattATTCCATTTTTGTGGTTGAAGTGAATATTTGGATGTTTTGATTTCAAGCGTTGGTGTCTGAGTGAATGTGTTGTTGAGGGGAAACCAAAAGTAACCGGGAGGAACGCAAGGCAGTCATGGACATTATAACACCTCAGACTCGAGACTGGACGACTTGGATTTGCACACCGGAGTTGGACCCCATCCAGCCCACTGTCCACTGATACAAATGAGTACCCATGTGCCATCTGAGACATGCTTCCTGGCTATGGAATCTCTCCTCTTCTTGATTTCCAGCCTCACCTCCAAGCGTTCCATTGCAGAGGCGAGAGCTCTGACATGTGGTTCCCAGGCTCAGTTGAGACCCAGGCACTGAGCGATTCTCGGGAAGGAAGGCCTCTCCTGCGGCAGCACCAACACATTGCTGTGTGTCAGCAAGAGACATTGGCCTTCATTGACCTTCAAGAGCAAAGTGTTAATGGTTTCCAATCATGCACATCAGAAAACTGTAGTTCCTCTCTTTGCTCCAAGCCTCTCAGATGCAATGGAAGGAGTCCATCTGAC
>TCONS_00044096
ACACAGGaatccagacacacacacacacacattcactcactgcTCTTTCTTTCTGCTTGGCAGGAAGAGTCTCCTCTGAACCAGACAACAGCTTGCACTTCTCTGCTTTTCCTCTGCTGGCAGGTGTTAGAAATAAAGCCATAAATAAGTGGACTTAAAGACAAcactacagagagagagagaggacaaaTGTCTTGCACAAGTGAGCAAGGGATATGAGGGGAAAAAGGAGAAGAAACCTGCATTTTTAGCGTTGGTGTCTGAGTGAATGTGTTGTTGAGGGGAAACCAAAAGTAACCGGGAGGAACGCAAGGCAGTCATGGACATTATAACACCTCAGACTCGAGACTGGACGACTTGGATTTGCACACCGGAGTTGGACCCCATCCAGCCCACTGTCCACTGATACAAATGAGTACCCATGTGCCATCTGAGACATGCTTCCTGGCTATGGAATCTCTCCTCTTCTTGATTTCCAGCCTCACCTCCAAGCGTTCCATTGCAGAGGCGAGAGCTCTGACATGTGGTTCCCAGGCTCAGTTGAGACCCAGGCACTGAGCGATTCTCGGGAAGGAAGGCCTCTCCTGCGGCAGCACCAACACATTGCTGTGTGTCAGCAAGAGACATTGGCCTTCATTGACCTTCAAGAGCAAAGTGTTAATGGTTTCCAATCATGCACATCAGAAAACTGTAGTTCCTCTCTTTGCTCCAAGCCTCTCAGATGCAATGGAAGGAGTCCATCTGAC

Function

symbol description
arhgef19 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within epidermis development and neural tube closure. Is expressed in post-vent region. Orthologous to human ARHGEF19 (Rho guanine nucleotide exchange factor 19).

GO:

id name namespace
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0008544 epidermis development biological_process
GO:0001843 neural tube closure biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-090313-243 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within epidermis development and neural tube closure. Is expressed in post-vent region. Orthologous to human ARHGEF19 (Rho guanine nucleotide exchange factor 19).

Ensembl:

ensembl_id ENSDARG00000078853 ENSDARG00000092130

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044093 False 1535 mRNA 0.47 11 24140043 24146591
TCONS_00044094 False 2877 mRNA 0.49 15 24140078 24148646
TCONS_00044095 False 803 processed_transcript 0.47 2 24148338 24167317
TCONS_00044096 True 746 lncRNA 0.49 3 24148338 24167350

Neighbor

gene id symbol gene type direction distance location
XLOC_022345 NA coding downstream 24086 24057410 ~ 24115957 (-)
XLOC_022344 CR925720.1 coding downstream 92989 24046032 ~ 24047054 (-)
XLOC_022343 NA coding downstream 690960 23379465 ~ 23449083 (-)
XLOC_022342 si:dkey-98j1.5 coding downstream 883317 23254976 ~ 23256726 (-)
XLOC_022341 NA coding downstream 886248 23193876 ~ 23253795 (-)
XLOC_022347 ano11 coding upstream 3321 24170671 ~ 24195723 (-)
XLOC_022348 NA coding upstream 17171 24184521 ~ 24187176 (-)
XLOC_022349 plekhm2 coding upstream 35209 24202559 ~ 24226533 (-)
XLOC_022350 ddost coding upstream 59946 24227296 ~ 24234371 (-)
XLOC_022351 zbtb17 coding upstream 71102 24238452 ~ 24253200 (-)
XLOC_022339 NA non-coding downstream 1116048 23012288 ~ 23023995 (-)
XLOC_022338 AL954857.1 non-coding downstream 1276472 22863457 ~ 22863571 (-)
XLOC_022358 NA non-coding upstream 328803 24496153 ~ 24500128 (-)
XLOC_022359 NA non-coding upstream 340504 24507854 ~ 24508822 (-)
XLOC_022363 NA non-coding upstream 441108 24608458 ~ 24611654 (-)
XLOC_022364 NA non-coding upstream 493956 24661306 ~ 24666612 (-)

Expression


Co-expression Network