XLOC_022351 (zbtb17)


Basic Information

Item Value
gene id XLOC_022351
gene name zbtb17
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24238452 ~ 24253200 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044105
ACCCAGCGGCCTGCAAAGCTCACGAGAAAACACACAGTCCTGTAAAGCCGTACTGTTGCTCCACATGTGGAAAGAGTTACAGACAGATCAGTCTGCTGAACCTGCACAGAAAGCGGCACACAGATGAAGCAAGATACAGCTGTGAGGACTGTGGAAAACTCTTCACCACTTCTGGAAACCTGAAGCGCCATCAGCTGGTGCACAGTGGAGAAAAACCTTACCAATGCGATCACTGCGACCGGGCCTTTTCTGACCCCACCGCAAAGATGAGGCACCTAGAGACCCATGACACTGACAAAGGGCACAAATGTCAACACTGTGACAAGAAATTCAACCAGGTGGGTAACCTGAAAGCACATCTAAAGATCCACATTGCGGATGGGCCACTGAAGTGTAAGGAGTGTGGGAAACAGTTCACCACCTCAGGAAACTTAAAGAGACACCTGCGTGTGCACAGTGGTGAGAAGCCGTTCATCTGTATGCACTGCCAGAGAGCCTTCGCCGACCCCGGGGCCCTGCAGAGACATGTTCGCATCCACACGGGTGAAAAGCCCTGTCTGTGTCTGATTTGTGGAAAAGGCTTCACACAGGCCAGTTCACTCATCGCTCATGTTCGCCagcacaccggagagaagccatATGTGTGTGACCGCTGCGGCAAAAGGTTTGTCCAGTCCAGCCAGCTAGCAAATCACATCCGTCACCATGACAACATCCGACCACACAAATGCCAAACCTGCAATAAAGCATTTGTCAACGTGGGCGATCTGTCAAAGCATATCATCATCCACACAGGAGAGAAGCCTTTCCTGTGTGATAAATGTGGTCGAGGATTCAACCGTGTGGACAATCTGCGTTCGCATGTGAAGACGGTGCACCAGGGGAAGGCGGGCATGAAGAGACTTGTTGTGGCAGAGGATGACGACGGGGAGGACAAGCTGCTGGCAGACTCGAACCCGGACTCTGAGCTCGACAGTAATGAAGTCAACATCGTCACAGTTACTACAGATGATATTGTGACTTTGGCCACAGAGGCTCTGGCTGCTACTACTGTAGCACAGCTCACAGTGGTACCGGTCGCAGCTTCTGTATCTGCAGATGAAACCGAGGCACTAAAAGCAGAGATCACCAAAGCTGTGGAGAAAGTACAAGAAGCAGATCCCAACACACAGATTCTGTATGCATGTGACTCGTGTGGAGAGAAGTTTCTGGATGCCAGTTCTCTGGCTCAGCACGTGCGCATTCACACCGCTCAGGCCCTGGTCATGTTTCAGGCAGACTCAGACTTCTACCAGCAGTACACCGGAGACGCCACATGGCAAACCACCGAGCAGGTCATCCAGGGAGGAGAGCTTCTGTTCAGGACACGCGACGAGGAGAGCGAGGAAGCCCAACCAGAGTCTCAGATGGACGGGGCAGAGGTGGAGAGCGAGGATGGGGCTGAAAAAGTGCACTCTGAAAGCCAACAGCAGTGAGGAGATTCAGGTCTGAATCCATAATAGATCCACATGGAATTGAATCTGTCACAAAGTGTAATATTTGTCATCAGAGGGATGGTTATTATCATTTATCATGCTGTAATAAAACGCATTCATATTTAGAAAATATGAGCAAGATGAAATATAATATCCCAAATCAAAAGAAATGTGTGTACAGCATATTGAAATTCTATTGTATAGTGCTAATTATATAAAACAGGATCAGATAAATGTacttaaatgaacaaaatgtaatTTATGCTGATCGTCAAAACTTTTAACATACTGTCGTCACCCTATATATGTCTTCTGTGCAT
>TCONS_00044106
ATGGATTTTCCATGGCATAGTGGGAAAGTACTTGGGCAGCTGAATGAACAGCGTCAGCTGGGTCTTCTTTGTGACTGCACCTTTGTGGTGGACGGCGTAGACTTCAAGGCCCACAAAGCTGTGCTTGCAGCCTGTAGCTCTTACTTCCGCACTCTCTTTCTTGACCAGAAGGATGTTGTTCATCTTGATATCAGCAATGCTGCAGGTCTTGAGCAGGTTCTCGAGTTTATGTACACCGCAAAGCTAACTCTGAATGCTCAGAACATAGAGGACGTTCTTGCTGTTGCTACTTTCCTTCAAATGCAAGAAATTGTCAATGCTTGTTCAGCTTTTCAGTCTTTGACCCCTGGTAAGTCTGGACTCTCAAAAGCCATTCCTTTGGAGGAACAAACAAAATCTGTGAAGAAACCAGAGGAGCCGGACAGTCATTCAGTGACTCAAAAAGCAGGTCCTGAAGAAAAAGAAGCTCAATCACAGTCAAAAACAGAAGAAACCCACGAGGCTGTGAGTAACGTGGCTGAGAAGCAAAGCACAAAGACTCTGAGAGCTGTCAGCAAAATTAGTGGACCATTGAAAACGAGACAGAAAGATTCCAAGAGTGAAAGTGAGGCAGAAAGAGCCACAAAAGAGCTCCCACAATTCCAAGATGACCCTAATGATGCAGACTACACGCCTAAACTGTCTCAGAGAATGGTGGCTAAACGGTCTGTTGTCAGCACAAGGAGAAGCAAGTCAAAATATGCAACTGTTCACACGGCCGCAGAAGTCAATGATGGTGAAGAAAGTGTGTCTAAAGTTGAGAGTATGGTAGAAGAAGAGAATGAAGATGATGGAGGAGAAGAAGACCTGGAGGACGATCAGACAGACGGAGAAGAAGAGATGGAGACAGAAGATGGAGAAATGATGGATTCAGAGGATAGGAAATTTGCGATTGGGGCCGAGCGCACAGAGTCCAGATCATATGGGTCCATTACACACAAATGTGAGGACTGTGGCAAGAAGTTTACACACACAGGCAACTTTAAGCGTCACATGCgcattcacactggagagaaaccattcacctgCAGAGACTGTAACAAAGCCTTCTCAGACCCAGCGGCCTGCAAAGCTCACGAGAAAACACACAGTCCTGTAAAGCCGTACTGTTGCTCCACATGTGGAAAGAGTTACAGACAGATCAGTCTGCTGAACCTGCACAGAAAGCGGCACACAGATGAAGCAAGATACAGCTGTGAGGACTGTGGAAAACTCTTCACCACTTCTGGAAACCTGAAGCGCCATCAGCTGGTGCACAGTGGAGAAAAACCTTACCAATGCGATCACTGCGACCGGGCCTTTTCTGACCCCACCGCAAAGATGAGGCACCTAGAGACCCATGACACTGACAAAGGGCACAAATGTCAACACTGTGACAAGAAATTCAACCAGGTGGGTAACCTGAAAGCACATCTAAAGATCCACATTGCGGATGGGCCACTGAAGTGTAAGGAGTGTGGGAAACAGTTCACCACCTCAGGAAACTTAAAGAGACACCTGCGTGTGCACAGTGGTGAGAAGCCGTTCATCTGTATGCACTGCCAGAGAGCCTTCGCCGACCCCGGGGCCCTGCAGAGACATGTTCGCATCCACACGGTCTCTTTGTTACACTGTTTTAGTTCACTCATCGCTCATGTTCGCCagcacaccggagagaagccatATCCTTTCCTGTGTGATAAATGTGGTCGAGGATTCAACCGTGTGGACAATCTGCGTTCGCATGTGAAGACGGTGCACCAGGGGAAGGCGGGCATGAAGAGACTTGTTGTGGCAGAGGATGACGACGGGGAGGACAAGCTGCTGGCAGACTCGAACCCGGACTCTGAGCTCGACAGTAATGAAGTCAACATCGTCACAGTTACTACAGATGATATTGTGACTTTGGCCACAGAGGCTCTGGCTGCTACTACTGTAGCACAGCTCACAGTGGCTCCTAAAGGAATATATTATGCTTCTGTATCTGCAGATGAAACCGAGGCACTAAAAGCAGAGATCACCAAAGCTGTGGAGAAAGTACAAGAAGCAGATCCCAACACACAGATTCTGTATGCATGTGACTCGTGTGGAGAGAAGTTTCTGGATGCCAGTTCTCTGGCTCAGCACGTGCGCATTCACACCGCTCAGGCCCTGGTCATGTTTCAGGCAGACTCAGACTTCTACCAGCAGTACACCGGAGACGCCACATGGCAAACCACCGAGCAGGTCATCCAGGGAGGAGAGCTTCTGTTCAGGACACGCGACGAGGAGAGCGAGGAAGCCCAACCAGAGTCTCAGATGGACGGGGCAGAGGTGGAGAGCGAGGATGGGGCTGAAAAAGTGCACTCTGAAAGCCAACAGCAGTGA

Function

symbol description
zbtb17 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within regulation of T cell migration. Orthologous to human ZBTB17 (zinc finger and BTB domain containing 17).

GO:

id name namespace
GO:2000404 regulation of T cell migration biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04110 Cell cycle
ko05200 Pathways in cancer
ko05202 Transcriptional misregulation in cancer
ko05222 Small cell lung cancer
ko03000 Transcription factors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-090313-240 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within regulation of T cell migration. Orthologous to human ZBTB17 (zinc finger and BTB domain containing 17).

Ensembl:

ensembl_id ENSDARG00000074548

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044105 False 1795 mRNA 0.49 9 24238452 24247672
TCONS_00044106 True 2385 mRNA 0.49 16 24238772 24253200

Neighbor

gene id symbol gene type direction distance location
XLOC_022350 ddost coding downstream 4081 24227296 ~ 24234371 (-)
XLOC_022349 plekhm2 coding downstream 11919 24202559 ~ 24226533 (-)
XLOC_022347 ano11 coding downstream 42729 24170671 ~ 24195723 (-)
XLOC_022348 NA coding downstream 51276 24184521 ~ 24187176 (-)
XLOC_022346 arhgef19 coding downstream 71102 24140043 ~ 24167350 (-)
XLOC_022352 hspb7 coding upstream 5123 24258323 ~ 24263474 (-)
XLOC_022353 fam131c coding upstream 47451 24300651 ~ 24343363 (-)
XLOC_022354 epha2b coding upstream 98104 24351304 ~ 24394719 (-)
XLOC_022355 spen coding upstream 183073 24436273 ~ 24483440 (-)
XLOC_022356 tmem82 coding upstream 232457 24485657 ~ 24488696 (-)
XLOC_022345 NA non-coding downstream 122495 24057410 ~ 24115957 (-)
XLOC_022343 NA non-coding downstream 789369 23379465 ~ 23449083 (-)
XLOC_022341 NA non-coding downstream 984657 23193876 ~ 23253795 (-)
XLOC_022339 NA non-coding downstream 1214457 23012288 ~ 23023995 (-)
XLOC_022358 NA non-coding upstream 242953 24496153 ~ 24500128 (-)
XLOC_022359 NA non-coding upstream 254654 24507854 ~ 24508822 (-)
XLOC_022363 NA non-coding upstream 355258 24608458 ~ 24611654 (-)
XLOC_022364 NA non-coding upstream 408106 24661306 ~ 24666612 (-)
XLOC_022366 dre-mir-26b non-coding upstream 422007 24675207 ~ 24675303 (-)

Expression


Co-expression Network