XLOC_022352 (hspb7)


Basic Information

Item Value
gene id XLOC_022352
gene name hspb7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24258323 ~ 24263474 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044107
ACAAGCAGGCAGACCCAGCTCATATAAACACTGAGAAAGCTGCTGAGTGGATTCATGGTGTTTTGAATAAGAACTTGATCACCGGTTCAATTTGAAGTTCTGACTGGATATCGATTTGAGAAAGCATCTCAACACTAATGAGCGCGAGCAATTCTTCTGCCTATCGATCGGAGCGTAGTTACCATCAGACGTCATCCTCCTCATCTTCATCCTCTACCTCTGCAAACCCATACATGGAGAAGAGCCGAGGACTCTTCGCTGACGACTTTGGATCTTTCATGTGTCCGAAGGATGCTTTGGGATTTCCAAACAGAACAGGCACTGTTGGAAACATCAAGACTCTTGGAGACACATACCAGTTCACAGTGGACGTGCAAGACTTCTCGCCTGAGGATGTGATCGTCACCACCTCAAACAATCAGATTGAAGTTCATGCTGAAAAGCTTGCTAGTGATGGGACAGTGATGAACACTTTCACCCATAAATGCCAGCTACCAGAAGATGTGGACCCCACTTCAGTGAAGTCCAGTTTAGGGGCCGATGGGACTCTGACTATAAAAGCACAGAGAAACACAGCTAAACTGGAGCATGCACAGACGTTCCGCACAGAGATCAAAATCTAGACCTGTGCCCTCCTGCTGTGTCTGTTTCACTGTGATAAATGACCTTGAAAATATAGCTACTTAGCCCTGCTTTGTCATTCCTCCATGACCTTCTCTCATTTCTGCTCATTAGACTTGGATGGAATTTAATCCTGTCACATGTATTCAAAACCTTTAAGATGAATGCACTGCTAACGTCAGCTCTCTGCTAATGACATATCAGCTTACAGGACAAAGTGGGCTCCAAAATTCTGGAAGTACATTTAATCCAAAATATAATTGAAACATTGAAAGATATCAGAATATATATGGCTATACAGTAGATATAGTACTTTagtactttaaattaaatttagttcacccaaacatgtaaatcctgccattatttactcattttccacttgttccaaacccaattaagttccgttgaacacaaaataaaatgtgcaaTGATGG

Function

symbol description
hspb7 Acts upstream of or within several processes, including Kupffer's vesicle development; cardioblast migration to the midline involved in heart rudiment formation; and determination of left/right symmetry. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including Kupffer's vesicle; adaxial cell; cardiovascular system; musculature system; and pericardial region. Used to study heart disease. Orthologous to human HSPB7 (heat shock protein family B (small) member 7).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0007507 heart development biological_process
GO:0071907 determination of digestive tract left/right asymmetry biological_process
GO:0060972 left/right pattern formation biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0003319 cardioblast migration to the midline involved in heart rudiment formation biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-041010-136 Acts upstream of or within several processes, including Kupffer's vesicle development; cardioblast migration to the midline involved in heart rudiment formation; and determination of left/right symmetry. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including Kupffer's vesicle; adaxial cell; cardiovascular system; musculature system; and pericardial region. Used to study heart disease. Orthologous to human HSPB7 (heat shock protein family B (small) member 7).

Ensembl:

ensembl_id ENSDARG00000104441

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044107 True 1058 mRNA 0.42 3 24258323 24263474

Neighbor

gene id symbol gene type direction distance location
XLOC_022351 zbtb17 coding downstream 5123 24238452 ~ 24253200 (-)
XLOC_022350 ddost coding downstream 23952 24227296 ~ 24234371 (-)
XLOC_022349 plekhm2 coding downstream 31790 24202559 ~ 24226533 (-)
XLOC_022347 ano11 coding downstream 62600 24170671 ~ 24195723 (-)
XLOC_022348 NA coding downstream 71147 24184521 ~ 24187176 (-)
XLOC_022353 fam131c coding upstream 37177 24300651 ~ 24343363 (-)
XLOC_022354 epha2b coding upstream 87830 24351304 ~ 24394719 (-)
XLOC_022355 spen coding upstream 172799 24436273 ~ 24483440 (-)
XLOC_022356 tmem82 coding upstream 222183 24485657 ~ 24488696 (-)
XLOC_022357 sult1st5 coding upstream 225603 24489077 ~ 24493811 (-)
XLOC_022345 NA non-coding downstream 142366 24057410 ~ 24115957 (-)
XLOC_022343 NA non-coding downstream 809240 23379465 ~ 23449083 (-)
XLOC_022341 NA non-coding downstream 1004528 23193876 ~ 23253795 (-)
XLOC_022339 NA non-coding downstream 1234328 23012288 ~ 23023995 (-)
XLOC_022358 NA non-coding upstream 232679 24496153 ~ 24500128 (-)
XLOC_022359 NA non-coding upstream 244380 24507854 ~ 24508822 (-)
XLOC_022363 NA non-coding upstream 344984 24608458 ~ 24611654 (-)
XLOC_022364 NA non-coding upstream 397832 24661306 ~ 24666612 (-)
XLOC_022366 dre-mir-26b non-coding upstream 411733 24675207 ~ 24675303 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_08531360_08533429 HSPB7 coding CI01000001 null 8530613 ~ 8533595 (-)