Fish Transcriptome and Expression Database

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model fish

XLOC_022366 (dre-mir-26b)

Basic Information

Item	Value
gene id	XLOC_022366
gene name	dre-mir-26b
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007134.7
NCBI id	CM002907.2
chromosome length	46223584
location	24675207 ~ 24675303 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044126
GCATTTGGCCTTTGCCTGGTTCAAGTAATCCAGGATAGGTTAGTTCCCACTAGTACGGCCTATTCTTGGTTACTTGTTTCAGGAGGAGGCTACGAGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000080579

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00044126	True	97	miRNA	0.48	1	24675207	24675303

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_022364	NA	coding	downstream	8595	24661306 ~ 24666612 (-)
XLOC_022363	NA	coding	downstream	63553	24608458 ~ 24611654 (-)
XLOC_022362	tmem240a	coding	downstream	92601	24571812 ~ 24582606 (-)
XLOC_022361	NA	coding	downstream	127643	24545239 ~ 24547564 (-)
XLOC_022360	atp13a2	coding	downstream	132255	24511417 ~ 24542952 (-)
XLOC_022367	sdf4	coding	upstream	18230	24693533 ~ 24699400 (-)
XLOC_022368	syt6a	coding	upstream	127596	24802899 ~ 24856025 (-)
XLOC_022369	CU041397.1	coding	upstream	174184	24849487 ~ 24849604 (-)
XLOC_022370	CR376748.1	coding	upstream	204924	24880227 ~ 24926348 (-)
XLOC_022371	zbtb48	coding	upstream	265996	24941299 ~ 24955155 (-)
XLOC_022359	NA	non-coding	downstream	166385	24507854 ~ 24508822 (-)
XLOC_022358	NA	non-coding	downstream	175079	24496153 ~ 24500128 (-)
XLOC_022348	NA	non-coding	downstream	488031	24184521 ~ 24187176 (-)
XLOC_022373	NA	non-coding	upstream	418570	25093873 ~ 25094328 (-)
XLOC_022376	NA	non-coding	upstream	627427	25302730 ~ 25304019 (-)
XLOC_022379	NA	non-coding	upstream	1108392	25783695 ~ 25786084 (-)

Expression

Co-expression Network

Homologous

species	gene id	symbol	gene type	chromosome	NCBI id	location
striped catfish (Pangasianodon hypophthalmus)	LOC113530699	NA	non-coding	NC_047610.1	CM018556.1	20058251 ~ 20070248 (+)
mexican tetra (Astyanax mexicanus)	G130854	NA	non-coding	NC_035911.1	CM008314.1	9978855 ~ 9981835 (+)