XLOC_022367 (sdf4)


Basic Information

Item Value
gene id XLOC_022367
gene name sdf4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24693533 ~ 24699400 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044128
CGAACTCACCTCATATAACAAAGGAAGAAGACGCGCCATCTGACAACGTAGCAATGTTTCTTTCCTGAACGCCCGTCTGCTGTCAGTCTGTGGAGATTCTTGCGGTTATCGGTCTGTCCAGCGTGAGTTTATGTGTGTTATCTGAGTCCACATAGGGAGGACGTTACTTTCAGGGCCATAAAGCTCTCTAGTGGTCTCGAGTGGCGACGTGTCCAGGAACTGCGCGTTGAGCCGCACATAAACAGTCACTTACTGCTTCATATACAACAGGCCATTAACTGCTGTTCATTCATCTGACAGTTCATTTGTGGGAGAGACCTTTTAAACAAACGGtttctaCATCGAATTCTGACATCCAAGCTGTAAAACCATGTTTAACTGGAGAAGATCCCAGCTTAGTTGCTTATGTGCATCAACTTTGGCAGTATTTGTGATGCTGGCGTTAAATGTTCAGGGCAGGCCAGCAAATATATCAGCATTAAAAGGCAAACAGCCTAACAGTAAGGAGGACAATGAGATCCTTCCACCTGATCACCTGAACGGTGTGAAGATGGAGATGGACGGTCACCTCAATAAAGACTTTCATCAGGAGGTGTTTCTAGGGAAGGAGATGGAGGAGTTCGAGGAGGATTCAGAGCCAAGAAGGAACAGGAAAAAGCTCATTGAAATCTTCACCAAGGTGGATATAAATAAAGACAGAAGTGTCAGTGCTAAGGAAATGCAGCGCTGGATCATGGAGAAAACAGAAGAACATTTTCAAGAAGCTGTTAGAGAAAACAAGCTTAGTTTCCGTGCTGTAGACCCTGATGGGGATGGACTTGTTACATGGGACGAATACCGTGTGAAGTTTTTGGCCAGCAAAGGTCTCAATGAAAAGGAAGTGGCTGAAAAGATCAAAAATAATGAAGAACTGAAAGTGGATGAAGAAACTCAGGAGGTTTTAGAGAGCTTGAAAGACCGCTGGTTTCAAGCTGATAATCCTCCTGCTGACCAGCTGCTGAATGAAGAGGAGTTCCTCTCGTTTCTGCACCCGGAGCACAGCAGAGGCATGCTCAGATACATGGTCAAGGAGATTGTCCGAGATCTTGATCAAGATGGAGATGGAAAGTTGACTCTTGCTGAATTCATCTCCCTCCCCATGGGAACTGTGGAGAATCAGCAGGCCCAGGACATCGATGACGACTGGGTTCGTGAAAGGAAGAAAGAGTTTGAAGAAGTTATTGACGCAAACCATGATACGATTGTAACCATGGAAGAGCTGGAGGAATACATGGACCCTATGAATGAGCACAACGCTCTTAATGAGGCCAAGCAGATGATCGCTGTGGCCGATGAAAACCAGAACCACAACCTGGAACTAGAAGAGATCCTAAAATACAGCGAGTATTTTACAGGCAGCAAACTCATGGACTACGCTCGTAACGTACATGAGGAGTTTTAGGAGTTCCTCAAGTCTTTATAAATAAGAAATGCATGTATATTTCACTGAAGTGTCGCAAGTGACAATGTTGGCCTTTGCTTGCTTCCCGAAATGGGATCAACAGGTGCATATGGAAATATTTGCAAATGTAAAATCCCGCAAGCCACAAAAACTTCTGTAATATTGCTGTGCACAGGTATGAGACTATTAAGACGTTGTGATTTCCATATGACCCCAGTATAATTAATTTTAGACACTGTCACTTTCATTAGTTTTGGAGTGTTTATAATTAAGAGAAATGTCTGTATATGAGGAATTGGTAAGGGTGTGTTATCGtggaattgattaaaaaaatgaattaatgtaaataatgtagtTATTTTGAGTGCCATAATATATTGATGCATTCTCATGTTGGGTGGGTTGATTTTTGAGATTAGGCTTTGAGCTTAAAATGTGTTATTTCCAAAGATTGCAATACAGTCAAATGATTTGGGCTGGTAATTTGGTGTTAAACATATTTAGCACTTCTAATTGAGATTGCATTAAAACTTTAAACGCAAAGTCGTCAAAAGTCTATTCTTTGAGAGGGATAATTACTCCGTCCAGATGTGACCTATTTGCACATTGAAGCATTTTAAGAAGCCCATTACTCACAGTTTGTTGAGGTCATAATTGTATATAGCATGAATGTTTTCTTtcgtatttgtttgttttttgcttttaaacATGCAGTTTGCTGTTACCTCAGAAGTCTCTTTCAGGCACAGATATTTCTCCATTATCAACTGTTTGagttcttgtaaaaaaaaaatgcttaaaaataattttatttaaacgaGAAATAGATTAAGAGGATTCTACTTGTTttcaattaaaatagttttttttttttgtgaatgacAATGAAAAATGAAACGACCGCTATATGTATTTTCTGGATATGAgaataaagttttattaaaatacacaACTGCTTCAAGAAA

Function

symbol description
sdf4 Predicted to enable calcium ion binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in Golgi lumen. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including epidermis; hatching gland; notochord; periderm; and polster. Orthologous to human SDF4 (stromal cell derived factor 4).

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005796 Golgi lumen cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-2061 Predicted to enable calcium ion binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in Golgi lumen. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including epidermis; hatching gland; notochord; periderm; and polster. Orthologous to human SDF4 (stromal cell derived factor 4).

Ensembl:

ensembl_id ENSDARG00000070682

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044128 True 2406 mRNA 0.40 7 24693533 24699400

Neighbor

gene id symbol gene type direction distance location
XLOC_022365 ctdsp2 coding downstream 11289 24669035 ~ 24682244 (-)
XLOC_022366 dre-mir-26b coding downstream 18230 24675207 ~ 24675303 (-)
XLOC_022364 NA coding downstream 26921 24661306 ~ 24666612 (-)
XLOC_022363 NA coding downstream 81879 24608458 ~ 24611654 (-)
XLOC_022362 tmem240a coding downstream 110927 24571812 ~ 24582606 (-)
XLOC_022368 syt6a coding upstream 103499 24802899 ~ 24856025 (-)
XLOC_022369 CU041397.1 coding upstream 150087 24849487 ~ 24849604 (-)
XLOC_022370 CR376748.1 coding upstream 180827 24880227 ~ 24926348 (-)
XLOC_022371 zbtb48 coding upstream 241899 24941299 ~ 24955155 (-)
XLOC_022372 avpr2aa coding upstream 339595 25038995 ~ 25050521 (-)
XLOC_022359 NA non-coding downstream 184711 24507854 ~ 24508822 (-)
XLOC_022358 NA non-coding downstream 193405 24496153 ~ 24500128 (-)
XLOC_022373 NA non-coding upstream 394473 25093873 ~ 25094328 (-)
XLOC_022376 NA non-coding upstream 603330 25302730 ~ 25304019 (-)
XLOC_022379 NA non-coding upstream 1084295 25783695 ~ 25786084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_08778667_08782959 SDF4.L, SDF4 coding CI01000001 null 8778420 ~ 8782959 (-)