XLOC_022368 (syt6a)


Basic Information

Item Value
gene id XLOC_022368
gene name syt6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24802899 ~ 24856025 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044129
ATGGGTTTTATTTTACTGTGCAGACATAGAGAACCAAGACAAGCTAACAGAATTAAAGAATACATCCTCTATCCTGATAAGGAGAATAACACGAACGTCTCTGTTGGCCTGCCGGTAGGTGTGATAATCGTGTGTGTCCTGGCACTGCTGCTGCTCGCCTCATTCGGCTCCTGGAAGCTCTGCTGGATCCCCTGGAGGAATAAAGCCCTGTCGTCCAGCTCTGCTGCCCTCCCGTCCGAGGCCATGGCGACGGAGAAGGAGAAGTACCCGATGGCATCCATGGGCTTCCTGGAAGCTGCTGTTAAAATCAGCCACACGTCTCCAGACATCCCGGCCGAGGTGCAGCTCTCCATGAGAGAACACTTTCTGAGGAGGACACAGCGCATGCAAAGGCAGACCACAGAGCCTGCCTCGTCCACCAGGCATAGCTCTTTCAAACGCCACCTTCCCCGTCAGATGCAGGTAAGCAGTCTGGACCTGGGGGATGACTACGACGTGGACGAGCAGCCGACCAGCATCGGCCGCATCAAGCCTGAACTCTACAAACAGATGACCACAGAAAACGACGAGTCCGCCAACAGCAAAGGCGGGAAAAACTGTGGCAAGATCAACTTCTCCCTCCGGTACGACTATGAGAACGAAATGCTACTAGTCAAAATTCTCAAAGCTTTTGATCTGCCGGCCAAGGATCTCTGCGGCAGCTCTGACCCGTACGTTAAAATCTACCTGCTGCCCGACCGCAAGCAGAAGTTTCAGACGCGAGTCCACAGAAAAACACTCAACCCTACGTTTGACGAGTCTTTCCAGTTTCCTGTGCCGTACGATGAGCTGGCAGTCAGAAAGCTCCATCTCAGCGTTTTTGACTTCGACCGCTTCTCTCGGCATGATATGATCGGAGAGGTCATTCTGGACAATCTGTTTGAAGTGTCTGATCTCTCGAGGGAGACGTCCATCTGGAGAGACATTCAGTATGCTACCTCTGAGAGTGTGGACCTTGGGGAGATCATGTTTTCACTCTGCTATCTACCTACTGCAGGCAGATTAACACTCACAGTCATCAAGTGCAGGAACCTGAAGGCCATGGATATTACAGGATATTCAGATCCCTATGTGAAAGTATCCCTCATTTGTGACGGCAGACGTCTGAAAAAGAAGAAGACCACAACAAAGAAAAACACCCTGAATCCAACGTATAATGAGGCCATTATCTTCGACATCCCTCCTGAGAGTATGGACCAAGTCAGCTTGCACATCTCAGTCATGGATTATGACCTTGTGGGCCATAATGAGATAATCGGTGTGTGTCGTTTGGGCTGTGGTGCTGAAGGTTTGGGCCGAGACCACTGGAATGAGATGCTTGCGTACCCCCGTAAGCCCATTGCACACTGGCACCCCCTGCTGGAGTCCAAGAAAACAGAAAAAGAGGTGAGTAAAATAGCTTGA
>TCONS_00044130
AGAGGGATCTGCCCCCAGCCTTTCGCCGTATCTTGCTGACTGGCTTGCTCTCACTGCCATAGAAACGGGCTTCTTGAGCGCGCTGGAGACTCATTCTGCTTGGGCGCTGCCGAGTGCAAGCATCACAGGAGGACAGAGAGAAAGTGTGAGAAAAACGAGACCAGTATCATTGACGTCTCTGTTGGCCTGCCGGTAGGTGTGATAATCGTGTGTGTCCTGGCACTGCTGCTGCTCGCCTCATTCGGCTCCTGGAAGCTCTGCTGGATCCCCTGGAGGAATAAAGCCCTGTCGTCCAGCTCTGCTGCCCTCGCTCCGGACGACTGCCCCTCGCCTCACATCCCATCTGTTCTGCCCAGTCCTCAGCCGTCCGAGGCCATGGCGACGGAGAAGGAGAAGTACCCGATGGCATCCATGGGCTTCCTGGAAGCTGCTGTTAAAATCAGCCACACGTCTCCAGACATCCCGGCCGAGGTGCAGCTCTCCATGAGAGAACACTTTCTGAGGAGGACACAGCGCATGCAAAGGCAGACCACAGAGCCTGCCTCGTCCACCAGGCATAGCTCTTTCAAACGCCACCTTCCCCGTCAGATGCAGGTAAGCAGTCTGGACCTGGGGGATGACTACGACGTGGACGAGCAGCCGACCAGCATCGGCCGCATCAAGCCTGAACTCTACAAACAGATGACCACAGAAAACGACGAGTCCGCCAACAGCAAAGGCGGGAAAAACTGTGGCAAGATCAACTTCTCCCTCCGGTACGACTATGAGAACGAAATGCTACTAGTCAAAATTCTCAAAGCTTTTGATCTGCCGGCCAAGGATCTCTGCGGCAGCTCTGACCCGTACGTTAAAATCTACCTGCTGCCCGACCGCAAGCAGAAGTTTCAGACGCGAGTCCACAGAAAAACACTCAACCCTACGTTTGACGAGTCTTTCCAGTTTCCTGTGCCGTACGATGAGCTGGCAGTCAGAAAGCTCCATCTCAGCGTTTTTGACTTCGACCGCTTCTCTCGGCATGATATGATCGGAGAGGTCATTCTGGACAATCTGTTTGAAGTGTCTGATCTCTCGAGGGAGACGTCCATCTGGAGAGACATTCAGTATGCTACCTCTGAGAGTGTGGACCTTGGGGAGATCATGTTTTCACTCTGCTATCTACCTACTGCAGGCAGATTAACACTCACAGTCATCAAGTGCAGGAACCTGAAGGCCATGGATATTACAGGATATTCAGATCCCTATGTGAAAGTATCCCTCATTTGTGACGGCAGACGTCTGAAAAAGAAGAAGACCACAACAAAGAAAAACACCCTGAATCCAACGTATAATGAGGCCATTATCTTCGACATCCCTCCTGAGAGTATGGACCAAGTCAGCTTGCACATCTCAGTCATGGATTATGACCTTGTGGGCCATAATGAGATAATCGGTGTGTGTCGTTTGGGCTGTGGTGCTGAAGGTTTGGGCCGAGACCACTGGAATGAGATGCTTGCGTACCCCCGTAAGCCCATTGCACACTGGCACCCCCTGCTGGAGTCCAAGAAAACAGAAAAAGAGTGGAAAGCCAGAACAGCTAGTTTTGACAGTCAGGGGTCTTGTCCTTCCCCCAAACCTCCTGCCAGCCCTTGATCAGAGCCATATGTTAAATAAACTCCAGGCTCGGCATCCTCGCAgttgtccgtccgtctgtcc

Function

symbol description
syt6a Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to act upstream of or within acrosome reaction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT6 (synaptotagmin 6).

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0017158 regulation of calcium ion-dependent exocytosis biological_process
GO:0007340 acrosome reaction biological_process
GO:0014059 regulation of dopamine secretion biological_process
GO:0005886 plasma membrane cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0001786 phosphatidylserine binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0030276 clathrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090601-2 Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to act upstream of or within acrosome reaction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT6 (synaptotagmin 6).

Ensembl:

ensembl_id ENSDARG00000076730

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044129 False 1443 mRNA 0.51 8 24802899 24825863
TCONS_00044130 True 1692 mRNA 0.53 7 24803101 24856025

Neighbor

gene id symbol gene type direction distance location
XLOC_022367 sdf4 coding downstream 103499 24693533 ~ 24699400 (-)
XLOC_022365 ctdsp2 coding downstream 120655 24669035 ~ 24682244 (-)
XLOC_022366 dre-mir-26b coding downstream 127596 24675207 ~ 24675303 (-)
XLOC_022364 NA coding downstream 136287 24661306 ~ 24666612 (-)
XLOC_022363 NA coding downstream 191245 24608458 ~ 24611654 (-)
XLOC_022370 CR376748.1 coding upstream 24202 24880227 ~ 24926348 (-)
XLOC_022371 zbtb48 coding upstream 85274 24941299 ~ 24955155 (-)
XLOC_022372 avpr2aa coding upstream 182970 25038995 ~ 25050521 (-)
XLOC_022373 NA coding upstream 237848 25093873 ~ 25094328 (-)
XLOC_022374 CR847803.1 coding upstream 239543 25095568 ~ 25098913 (-)
XLOC_022359 NA non-coding downstream 294077 24507854 ~ 24508822 (-)
XLOC_022358 NA non-coding downstream 302771 24496153 ~ 24500128 (-)
XLOC_022376 NA non-coding upstream 446705 25302730 ~ 25304019 (-)
XLOC_022379 NA non-coding upstream 927670 25783695 ~ 25786084 (-)
XLOC_022380 BX005414.1 non-coding upstream 933107 25789132 ~ 25793093 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_08851970_08866723 SYT6A, SYT6 coding CI01000001 null 8851868 ~ 8866845 (-)
bowfin (Amia calva) AMCG00013801 LOC108433426,LOC107591076 coding CM030125.1 CM030125.1 43114300 ~ 43133761 (-)