CI01000001_08851970_08866723 (SYT6A, SYT6)


Basic Information

Item Value
gene id CI01000001_08851970_08866723
gene name SYT6A, SYT6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8851868 ~ 8866845 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_08851970_08866723.mRNA
ACACAAAATGACAGATCTCCCTTTTCTTTTACAATAATGTTTACACAGTGCTTGTCAGCAGTCTTGGAGCTTCTCCAGCCCATTTGTTCTATTGCAAGCAAATTCTCTGTAATCGTGAAGAAATGAGTTTGAGCTTGCTTTCCGCCTACATGGACATCACTGTTGGCCTCCCCATTGGTGTGATAATTGCGTGTGGTTTGGCGCTGCTGTTGCTCACCTCATTCGTCTCCTGGAAGCTGTGCTGGGTTCCTTGGAGGAAGAAAGCCCTCTCGTCAAGTTCTGCGGCCCTCGCCCCTGACGACTGCCCCTCGCTTCATTTACCATCTCTCCTGCCCAGTCCTCAGCCGTCCGAGGTCGCCATGGCGACTGAAAAGGAAAAGTATTCCATGGCATCGATGGGCTTCCTGGAGGCAGCCGTTAAAATAAGCCACACGTCTCCCGACATCCCGGCCGAGGTACAGCTCTCCATGAGAGAGCACTTTTTGCGGCGTACACAGCGCATGCAAAGACAGACCACAGAGCCTGCGTCATCCACCAGGCACAGTTCCTTCAAACGTCACCTTCCCCGTCAAATGCAGGTAGGAAGTCTGGACCTGGGAGATGATTATTATGTGGATGAGCAGCCAACCAGCATTGGCCGTATCAAGCCTGAACTCTACAAGCAGATGACCACAGACAACGACGACTCCGGTAATAGTAAAAGCGAAAAAAACTGTGGCAAGATCAACTTTTCTCTCCGCTATGACTATGAGAATGAGATGTTACTTGTCAAGATACTCAAGGCATTTGATCTACCAGCCAAGGATCTTTGCGGCAGCTCTGACCCCTATGTCAAGATCTACCTGCTGCCAGATCGGAAGCAGAAGTTCCAGACACGAGTCCATCGTAAAACACTCAACCCCACGTTTGACGAGTCCTTCCAGTTTCCAGTACCCTATGATGAGCTTCCTGTCAGGAAGCTCCATCTCAGCGTTTTTGACTTCGACCGGTTCTCACGGCACGATATGATTGGGGAGGTCATATTGGACAATCTGTTTGAAGTGTCTGATCTCTCAAGGGAAACCTCCATCTGGAGAGACATTCAGTATGCTACCTCTGAGAGCGTGGACCTTGGGGAGATCATGTTCTCACTCTGCTATCTACCTACAGCAGGCAGATTAACACTCACAGTCATCAAGTGCAGGAACCTAAAGGCAATGGACATCACAGGATACTCAGATCCCTATGTGAAAGTATCCCTCATTTGTGACGGGAGGCGTCTCAAAAAGAAGAAGACCACAACAAAGAAAAACACCCTGAATCCTACTTATAATGAGGCTATTATCTTTGACATCCCTCCTGAGAGCATGGACCAAGTCAGCTTGCACATCTCAGTCATGGACTATGACCTGGTGGGCCACAATGAGATAATTGGCGTGTGCCGTTTGGGCTCTGGTGCTGAAGGTTTAGGTAGAGACCACTGGAATGAGATGCTCGCATACCCCCGTAAGCCAATTGCACACTGGCACCCCCTGGTGGAGCCTAAGAAATCAGAAAAAGAGATCCCTCTAGTCACATCCTCAAACTTTGCTTCATGAATAATACATGAGTGAAATATGTCAGTGCTGATTTTAATTCACACACTGAAATTCTGTTCCCTTTTCTGAAATGTGGTCAAGAGTTAATCATGAGGGAAAAAA

Function

symbol description
syt6a Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to act upstream of or within acrosome reaction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT6 (synaptotagmin 6).
syt6 Enables clathrin binding activity and syntaxin binding activity. Involved in acrosomal vesicle exocytosis. Predicted to be located in cytosol and perinuclear endoplasmic reticulum. Predicted to be extrinsic component of membrane and integral component of membrane. Predicted to be active in exocytic vesicle; glutamatergic synapse; and plasma membrane. Predicted to be integral component of synaptic membrane.

GO:

id name namespace
GO:0070382 exocytic vesicle cellular_component

KEGG:

id description
K19906 SYT6; synaptotagmin-6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_08851970_08866723.mRNA True 1679 mRNA 0.48 7 8851868 8866845

Neighbor

gene id symbol gene type direction distance location
CI01000001_08778667_08782959 SDF4.L, SDF4 coding downstream 68909 8778420 ~ 8782959 (-)
CI01000001_08764768_08766941 CTDSP2 coding downstream 84927 8764707 ~ 8766941 (-)
CI01000001_08703019_08711171 TMEM240A, TMEM240 coding downstream 140697 8702542 ~ 8711171 (-)
CI01000001_08693299_08699315 SDHB, SDHB.S coding downstream 152553 8692538 ~ 8699315 (-)
CI01000001_08675171_08691078 ATP13A2 coding downstream 160790 8674946 ~ 8691078 (-)
CI01000001_08904658_08904945 NA coding upstream 37799 8904644 ~ 8905238 (-)
CI01000001_08942877_08948672 NA coding upstream 75935 8942780 ~ 8948672 (-)
CI01000001_08990605_08998643 AVPR2AA coding upstream 123745 8990590 ~ 8999534 (-)
CI01000001_09032204_09038149 IDH3G coding upstream 165359 9032204 ~ 9038149 (-)
CI01000001_09213449_09223894 LRP1AB, LRP1 coding upstream 346586 9213431 ~ 9224350 (-)
G18563 NA non-coding downstream 67515 8784128 ~ 8784353 (-)
G18544 NA non-coding downstream 123489 8728158 ~ 8728379 (-)
G18470 NA non-coding downstream 125595 8721013 ~ 8726273 (-)
G18492 NA non-coding downstream 194530 8657082 ~ 8657338 (-)
G18537 NA non-coding downstream 231133 8620482 ~ 8620735 (-)
G18581 NA non-coding upstream 85517 8952362 ~ 8953947 (-)
G18588 NA non-coding upstream 101704 8968549 ~ 8969736 (-)
G18572 NA non-coding upstream 161319 9028164 ~ 9028519 (-)
G18594 NA non-coding upstream 161839 9028684 ~ 9028903 (-)
G18624 NA non-coding upstream 188938 9055783 ~ 9056186 (-)
G18223 NA other downstream 923351 7926104 ~ 7928517 (-)
G18023 NA other downstream 1094348 7756501 ~ 7757520 (-)
G17911 NA other downstream 1598614 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 1914645 6931621 ~ 6937231 (-)
G17789 NA other downstream 1961454 6837525 ~ 6890414 (-)
CI01000001_09804494_09811219 NA other upstream 942812 9804429 ~ 9811219 (-)
G20136 NA other upstream 1672182 10539027 ~ 10539850 (-)
CI01000001_10862471_10864514 NA other upstream 1995380 10862225 ~ 10865770 (-)
G20230 NA other upstream 2155282 11022127 ~ 11028777 (-)
G20319 NA other upstream 2243992 11110837 ~ 11114747 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022368 syt6a coding NC_007134.7 CM002907.2 24802899 ~ 24856025 (-)