CI01000001_08693299_08699315 (SDHB, SDHB.S)


Basic Information

Item Value
gene id CI01000001_08693299_08699315
gene name SDHB, SDHB.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8692538 ~ 8699315 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_08693299_08699315.mRNA
ATGTCAGGCATTTCATATAACTATTATGAAGTCTTAGAAAATATTCAGCATTATGGTATGGACAAATTCACGCCCATCTACGCTCACGCTGGCATTAGGAGGAGGAGCAGCAGCAGATGGCATCTTACATACTTGAAACTGTTGTTGAAGAAGCCGCTTAAGTCACAAAACTCCTTCATAACAACACTGACGTGGAAAATGTTCGTATGCACTTCTCTTACTCGCAGCTCTGTTGCTTTTCGCAGCTGTAGGACATTGGTGCTGGTGCGATATGCCCAGACAGCAGCTGCCCCTGCCCCTGAGCCAAAAATAAAGAAATTTCAGATTTACAGATGGGACCCTGACACATCTGGTGACAAGCCCCGCATGCAAACCTATGAGGTTGATTTGAACACATGTGGTCCAATGATTCTTGATGCCCTCATCAAAATTAAAAATGAAATGGACCCGACACTCACCTTCAGACGCTCATGTAGAGAGGGTATCTGTGGCTCATGTGCTATGAACATCAATGGGGGCAACACTTTAGCCTGTATAAACAAAATAGATACAAATACCAGCAAAGTGTCAAAGATTTACCCTCTACCTCACATGTATGTTGTGAAAGATCTTGTCCCTGATATGAGCAACTTTTATGCACAGTACAAGTCCATTGAGCCCTATCTAAAGAAGAAGGATGAGTCAAAGCAGGGAAAAGAGCAGTACCTCCAGACAATCGAGGACCGTCAAAAGCTGGTTCGAGACCTTCTGCTGAATATTCTACTGATTCTGTCAGATGGCCTGTATGAATGCATTCTGTGTGCCTGCTGCAGCACTAGTTGTCCTAGTTACTGGTGGAATGGAGACAAGTACCTTGGTCCAGCTGTGCTCATGCAGGCGTATAGGTGGATGATTGATTCTCGTGATGACTTTACAGAAGAGCGTCTGTCCAAATTACAGGACCCTTTCTCACTCTACCGCTGTCACACAATAATGAATTGTACAAAGGCATGTCCCAAGGGACTCAATCCCGGAAAGGCCATAGCAGAGATTAAGAAAATGATGGCGACTTACAAAGAAAAGAGATCGTCTGCCATCTGACTTGTACATTCGGGAAATATAATGTACTTAATGATTTCAATTATTGTGTAAATGTGTAAATCCAGTATGGAGTGTTCTGCTAATATGGGATATTTAGTTTTTATTTTGTTTGATAGTAGAGACCTATAGTTACTGCTAATGTAAAACAAAAAAATGGATTGAGGTTATTATACTGTAATGAGTATCAGAATGCAGGAAGCTGTAAAAAATGTCATAATATACAACATGTAATAACATAATATTTGTGTCCTAGTTTGTGTGGTAGATTCCTACTGTACAAGTACTGTCCTACAACTTTGCTTGCTATAAAACATACTCAAATATCTGAATGTTTAAGATCACAGTCATCTGTTTACAAAATGTGTTCTGCCTAGCATGGAAAGGCATGTTTTATAGTAGCGAAGAAGATGTGAAGCGCATGCTTTTTCAGAATTAGATTTAGAGAAGGTTAAGTCTCATCATGTCCTCCAGGTGGCGGTGTTCAATGGGTGAGCTGACAAAAGAACGTAAAGGAAGAAGGGTTATGGCGTCACGTTTATAAAACTGACGCTTGAAGCAGAAACTGTTAGTTTCTGCGGTAGTGTGTAATGAAATAATGATTGTGCAAAAGTATGTGCTTTAGCACTCACGTTTTAGATCATAGATGGATTCACCAGGTATGGGTAAGTGCAATTCGCCTGTGCATGTCAATATTGAAAGAAATATCTCTAGATATCTCAGTTTCGCATCCCATGAAGTCTGCTTGGCTGAAATTTAATAAA

Function

symbol description
sdhb Predicted to enable iron-sulfur cluster binding activity and ubiquinone binding activity. Predicted to be involved in aerobic respiration and respiratory electron transport chain. Predicted to act upstream of or within tricarboxylic acid cycle. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Predicted to be active in mitochondrial membrane. Is expressed in several structures, including alar plate midbrain region; immature eye; optic tectum; pronephric duct; and segmental plate. Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; gastrointestinal stromal tumor; mitochondrial complex II deficiency; paraganglioma; and pheochromocytoma. Orthologous to human SDHB (succinate dehydrogenase complex iron sulfur subunit B).

GO:

id name namespace
GO:0045273 respiratory chain complex II cellular_component

KEGG:

id description
K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_08693299_08699315.mRNA True 1841 mRNA 0.40 9 8692538 8699315

Neighbor

gene id symbol gene type direction distance location
CI01000001_08675171_08691078 ATP13A2 coding downstream 1460 8674946 ~ 8691078 (-)
CI01000001_08663046_08664386 NA coding downstream 28028 8662692 ~ 8664510 (-)
CI01000001_08628335_08656011 SPEN coding downstream 36527 8626551 ~ 8656011 (-)
CI01000001_08581266_08604666 EPHA2B, EPHA2 coding downstream 87770 8581211 ~ 8604768 (-)
CI01000001_08556504_08563679 FAM131C coding downstream 128859 8556042 ~ 8563679 (-)
CI01000001_08703019_08711171 TMEM240A, TMEM240 coding upstream 3227 8702542 ~ 8711171 (-)
CI01000001_08764768_08766941 CTDSP2 coding upstream 65392 8764707 ~ 8766941 (-)
CI01000001_08778667_08782959 SDF4.L, SDF4 coding upstream 79105 8778420 ~ 8782959 (-)
CI01000001_08851970_08866723 SYT6A, SYT6 coding upstream 152553 8851868 ~ 8866845 (-)
CI01000001_08904658_08904945 NA coding upstream 205329 8904644 ~ 8905238 (-)
G18492 NA non-coding downstream 35200 8657082 ~ 8657338 (-)
G18537 NA non-coding downstream 71803 8620482 ~ 8620735 (-)
G18536 NA non-coding downstream 72729 8619320 ~ 8619809 (-)
G18513 NA non-coding downstream 273964 8414953 ~ 8418574 (-)
G18313 NA non-coding downstream 315612 8374731 ~ 8376926 (-)
G18470 NA non-coding upstream 21698 8721013 ~ 8726273 (-)
G18544 NA non-coding upstream 28843 8728158 ~ 8728379 (-)
G18563 NA non-coding upstream 84813 8784128 ~ 8784353 (-)
G18581 NA non-coding upstream 253047 8952362 ~ 8953947 (-)
G18588 NA non-coding upstream 269234 8968549 ~ 8969736 (-)
G18223 NA other downstream 764021 7926104 ~ 7928517 (-)
G18023 NA other downstream 935018 7756501 ~ 7757520 (-)
G17911 NA other downstream 1439284 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 1755315 6931621 ~ 6937231 (-)
G17789 NA other downstream 1802124 6837525 ~ 6890414 (-)
CI01000001_09804494_09811219 NA other upstream 1110342 9804429 ~ 9811219 (-)
G20136 NA other upstream 1839712 10539027 ~ 10539850 (-)
CI01000001_10862471_10864514 NA other upstream 2162910 10862225 ~ 10865770 (-)
G20230 NA other upstream 2322812 11022127 ~ 11028777 (-)
G20319 NA other upstream 2411522 11110837 ~ 11114747 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022361 NA coding NC_007134.7 CM002907.2 24545239 ~ 24547564 (-)