CI01000001_08703019_08711171 (TMEM240A, TMEM240)


Basic Information

Item Value
gene id CI01000001_08703019_08711171
gene name TMEM240A, TMEM240
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8702542 ~ 8711171 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_08703019_08711171.mRNA
ATGATTTTTATGATCCTCGGTGCTTCAGTTGTCATGGCGATAGCGTGTTTAATGGACATGAACGCACTCCTGGACCGCTTTCACAACTACATCTTACCGCATTTACGAGGGGAAGACCGCGTCTGTCATTGCAACTGTGGAAGGCATCATGTTCACTACGTAATTCCATATGATGGAGACCATTCGCTCGTGGACTCGTCTGAGAATTACTTTGTGAGTGACAGTGTGACCAAACAGGAGATGGACCTCATGCTGGGGCTGTTGCTGGGCTTCTGTATCAGCTGGCTGTTGTTGTGGCTGGATGGAGCTTTGCACTGTGCTGTGAGGGCCTGGAGAGCCAGTCGCTATTATGGCAACACAGCAGTTGTTTATAACAGTTGTCTGTGGTCCTTTGAGAGTAAAGAGATACCCCTTCCTGGTCGTGGTTGCCACAGTTCTGCAACCTTCGGGACCTCCGTAGACGCGCACAGCTTCGGCAACTGGAGGATTCCAGCGGAAACATGGTGCACATCAAGCAGAAGCTCTATCACAATGGTCATCCCAGCCCCCGCCACCTCTGACTTTAACAGCAGTTTCCCCAAAACTGCTCCATTACCAGCTGCTGCCTCAGAGACCCACTTTAATTGTTCCACTACATCTTTTAGACCTTCAAGAACCACTCAAGTATTTGCCAAAAGAAGAAAGAAGATTATTGTTGACAATATGCTGATCTGTGTCCACGTTCGCCACGTTTGGCGAATGGTTTAGAAAGGTTTTTTCTGTACAGGCATTTTATTTCCAATTGCTGATTCTAGGCATGCACTTTTAGAATGGGGGAGGATGCAAGAAATGGTTTTATGAGACATTGGGAGTCAATTCATGTTTATTCCTTGCTTTTTTCCCCCCACCTTTTTTAGCTTTTTCATCAGGATACAACTTTTTGGGAGGGGGGTGATAAGCGGGTGGGGTGGGAGGGCGGAGGTCATGGTTTTGTGATGGTATAGTTAGAGATTAATGATCATGTAAATAGTTATACATATTGTTTTATGGGATTTAAATGAACACGGGAGTAAGAGGTAACTGTATAAAAAGAGAGAAAAAACATAAAGAGGAAAGAATTTTGAATGCAGATGTGATATGTGAACTTTTTGGATGGATGAAAAAGAGATCACTCTAAAAAAAATGATCGATTAGCTTTGTTACTACGTGAAATTAATGAATGTATTAATTTTATCTGTAAATAAA

Function

symbol description
tmem240a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 21. Orthologous to human TMEM240 (transmembrane protein 240).
tmem240 Predicted to be integral component of membrane. Predicted to be active in synaptic membrane. Implicated in spinocerebellar ataxia type 21.

GO:

id name namespace
GO:0097060 synaptic membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_08703019_08711171.mRNA True 1224 mRNA 0.43 5 8702542 8711171

Neighbor

gene id symbol gene type direction distance location
CI01000001_08693299_08699315 SDHB, SDHB.S coding downstream 3227 8692538 ~ 8699315 (-)
CI01000001_08675171_08691078 ATP13A2 coding downstream 11464 8674946 ~ 8691078 (-)
CI01000001_08663046_08664386 NA coding downstream 38032 8662692 ~ 8664510 (-)
CI01000001_08628335_08656011 SPEN coding downstream 46531 8626551 ~ 8656011 (-)
CI01000001_08581266_08604666 EPHA2B, EPHA2 coding downstream 97774 8581211 ~ 8604768 (-)
CI01000001_08764768_08766941 CTDSP2 coding upstream 53536 8764707 ~ 8766941 (-)
CI01000001_08778667_08782959 SDF4.L, SDF4 coding upstream 67249 8778420 ~ 8782959 (-)
CI01000001_08851970_08866723 SYT6A, SYT6 coding upstream 140697 8851868 ~ 8866845 (-)
CI01000001_08904658_08904945 NA coding upstream 193473 8904644 ~ 8905238 (-)
CI01000001_08942877_08948672 NA coding upstream 231609 8942780 ~ 8948672 (-)
G18492 NA non-coding downstream 45204 8657082 ~ 8657338 (-)
G18537 NA non-coding downstream 81807 8620482 ~ 8620735 (-)
G18536 NA non-coding downstream 82733 8619320 ~ 8619809 (-)
G18513 NA non-coding downstream 283968 8414953 ~ 8418574 (-)
G18313 NA non-coding downstream 325616 8374731 ~ 8376926 (-)
G18470 NA non-coding upstream 9842 8721013 ~ 8726273 (-)
G18544 NA non-coding upstream 16987 8728158 ~ 8728379 (-)
G18563 NA non-coding upstream 72957 8784128 ~ 8784353 (-)
G18581 NA non-coding upstream 241191 8952362 ~ 8953947 (-)
G18588 NA non-coding upstream 257378 8968549 ~ 8969736 (-)
G18223 NA other downstream 774025 7926104 ~ 7928517 (-)
G18023 NA other downstream 945022 7756501 ~ 7757520 (-)
G17911 NA other downstream 1449288 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 1765319 6931621 ~ 6937231 (-)
G17789 NA other downstream 1812128 6837525 ~ 6890414 (-)
CI01000001_09804494_09811219 NA other upstream 1098486 9804429 ~ 9811219 (-)
G20136 NA other upstream 1827856 10539027 ~ 10539850 (-)
CI01000001_10862471_10864514 NA other upstream 2151054 10862225 ~ 10865770 (-)
G20230 NA other upstream 2310956 11022127 ~ 11028777 (-)
G20319 NA other upstream 2399666 11110837 ~ 11114747 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location