CI01000001_09213449_09223894 (LRP1AB, LRP1)


Basic Information

Item Value
gene id CI01000001_09213449_09223894
gene name LRP1AB, LRP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9213431 ~ 9224350 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_09213449_09223894.mRNA
ATATTCATTTCCTCTTTGAAGGATATAATATGATATTAATCCTGTTTGAAGTCATTACCATCCTTTACAAGATGTTCAAATGCCTTTTTTTTTTTTTTCTTCCATGTGTCATTTTTAGCTTCTAGTGTCCTTCTGGATGCAGTAGAACTGCAGGGAACAGTTTGTTCAAACTAAATACAGTGCATCTGTGCAACTGTGCACAGAATTATAATTAAGAGAAACAGATTAAGTTGTTCTTGGATCAGAAACAAGCATTCAGAGCAGAATTCTCTAGATAATTCCTTTAGTCCAATTTTTTTTTTATTTCTTTCAACAGATGTAGGGTCAGTTGAAGGTTTGGCTTATCACCGTGGTTGGGACACACTTTACTGGACCAGCTATACCACCTCCACCATTACACGGCACACTGTGGACCAGAGTCGCACTGGAGCTTTTGATAGAGACACCGTGGTCACTATGTCCGGGGACGACCACCCCAGAGCCTTTGTTCTGGATGAATGTCAAGACCTGATGTTCTGGACTAACTGGAATGAACAGTCTCCCAGTATCATGCGAGCATCTCTTTCTGGAGCTAACGTCCTTGTTATCATCGGAAATAACATCCGCACCCCGAACGGACTGGCCATCGACCACCGTGCTGAGAAACTCTATTTCTCTGACGCCACATTTGACAAGATTGAGCGCTGCGAGTATGATGGCAGCCGGCGCTTTGTGGTCCTAAAGAACGAGCCAGTGCATCCTTTCGGTTTGGCTGTGTATGGTGAATATATCTTCTGGACAGACTGGGTGCGCAGAGCTGTTCTCAGAGCTGATAAATACGGCAGAGATATGAAAGTCCTACGTGCTGACATTCCTCAACAGCCAATGGGCATCATCGCTGTGGCCAAAGACACCAATAGCTGTGAGTTTTCTCCATGCCTCACCAATAACGGAGGCTGTCAGGACCTGTGTCTGCTCACGTCAGAGGGACGAGTCAACTGTAGCTGCCGTGGAGAGCGCAAACTACTGGGAGACAACACTTGTGTTGCGGAGAACACAACCTGTAACAGCGTGGATGAGTTTGAGTGTGGAAACGGTGACTGTATCGACTACAGCTTTACCTGTGACAGTCAGGCCCACTGCAAAGACAAGTCTGATGAGAAGCAGTCCTACTGTGTGAACCGCATGTGTAAGAAGGGCTACCGGCGCTGCATTAACGGACGCTGTATCAAACACAGCTCCTGGTGCGACGGCACTGATGACTGTGGAGATGGTTCAGACGAGCTGCCGTGCAACATGACTCTGTGCAGCGCTGCTGAGTTCCAGTGCAAAGACGGTTCCTGCATCACTAACTCTAGTCGCTGTAATCAGGTGGCGGACTGTGAGGACGCCAGTGATGAGATGAACTGCAGCCCCACTGACTGCTCTAGTTACTATCTGCTTGGAGTGAAGGGCATGACCTTCGAGAGGTGTGAGTTCACTACACTCTGCTACGCCCCCTCCTGGCGCTGTGATGGCTCCAATGACTGCGGAGACTTCTCAGATGAAAGAAACTGTCCGGAGAAAAGGAAGCAGAAATGTACAGTGAACTTCTTTGCGTGTCCGAGCGGCCGTTGTATTCCCATGAGCTGGACCTGTGACAAAGAGAATGACTGTGAGAATGGAGCAGATGAGTCTCACTGTGATAAGTTCTGTGCATCAAATCAGTTTGAGTGTGGAAACCATCGTTGTATCTCCAAATCCTGGGTGTGTGACGGCACTGATGACTGTGGAGACGGCACTGATGAGGACAGCAAATGCAAGACAAAGACTTGCAGTCCAGAAGCATTCCAATGTCCCGGCTCCCACATGTGTATTTCTCAGCGTTGGAAGTGTGACGGGGATAAGGACTGTCCTGATGGTGCAGATGAGGGCATCAAGGCGGGCTGTGCGTTCAATAAGACCTGTGATGACTCTGAATTCCAATGTCAGAATTATCAGTGTATTCCCAAAAACTTCATGTGTGATCATGACGTTGACTGCCGCGATGGCTCTGACGAGTCGCCCGAGTGTGAATATCCCACGTGTGGGCCGAACGATTTCCGCTGTGCTAATGGCCAGTGTTTGAAGCAGAAGAGCTGGGAGTGTGACGGAGAGTTTGACTGTAGGGACCAATCAGACGAAGCTCCCAAAAACCCACTTTGCACAGACCCAGAGAGGCGCTGTAATGACACTTCCTTCCTGTGTGCCAATGGCAAGTGTGTGAACGAGACATTGCTGTGTGATGGTAACGATGAGTGTGGTGACGGCTCTGATGAACACAACTGCTTCATCAATGAATGTCTCAACATTGGACATAACAGTGAAGACATGGCATACCTCTTGCCCGGCCCCCCACAGTGCCGGTGTCATCCAGGTTTCCGTCTGAAGCAAGATGGAAAGACGTGTGTGGATGTGGATGAGTGCACCACCACATATCCCTGTGCTCAGCGTTGCATCAACACACACGGCAGCTTCCACTGCCTCTGTGTCGATGGCTTTGAGACGCGTCCTGATGACCCCACCAGCTGCAAATCCACATCTGGTGAGCCTCTCCCCATGTTCTCTTACGTTCTGGTCGTTACCAAAACAGCTATGGAAGTGTTTCTTTCTCAGAGTAAAAAATCAAAAAGTAATAACTCACTGCCTTGCTGCTACTCTTCCATCATTCTCATCTGCCTGACCCGTAGAGAGACTCGGCTAGCCCCGCTTGTGGCCGAGCCTCCACTGCTTCTAATGGAGCTGGAGAACTTCATGAATCACAGACAATAACACATATTAAGAAATAAA

Function

symbol description
lrp1ab Predicted to enable calcium ion binding activity. Acts upstream of or within regulation of vasculature development. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Alzheimer's disease; keratosis pilaris atrophicans; myocardial infarction; and sciatic neuropathy. Orthologous to human LRP1 (LDL receptor related protein 1).
lrp1 Enables alpha-2 macroglobulin receptor activity; apolipoprotein binding activity; and clathrin heavy chain binding activity. Involved in several processes, including amyloid-beta clearance by cellular catabolic process; amyloid-beta clearance by transcytosis; and positive regulation of lysosomal protein catabolic process. Located in basolateral plasma membrane and early endosome. Part of receptor complex. Implicated in Alzheimer's disease; keratosis pilaris atrophicans; myocardial infarction; and sciatic neuropathy.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04550 LRP1, CD91; low-density lipoprotein receptor-related protein 1 (alpha-2-macroglobulin receptor)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_09213449_09223894.mRNA True 2787 mRNA 0.49 17 9213431 9224350

Neighbor

gene id symbol gene type direction distance location
CI01000001_09032204_09038149 IDH3G coding downstream 175282 9032204 ~ 9038149 (-)
CI01000001_08990605_08998643 AVPR2AA coding downstream 213897 8990590 ~ 8999534 (-)
CI01000001_08942877_08948672 NA coding downstream 264759 8942780 ~ 8948672 (-)
CI01000001_08904658_08904945 NA coding downstream 308193 8904644 ~ 8905238 (-)
CI01000001_08851970_08866723 SYT6A, SYT6 coding downstream 346586 8851868 ~ 8866845 (-)
CI01000001_09228393_09265951 LRP1AB, LRP1 coding upstream 4016 9228366 ~ 9266098 (-)
CI01000001_09270954_09281725 NA coding upstream 45352 9269702 ~ 9282511 (-)
CI01000001_09322428_09325859 NA coding upstream 97780 9322130 ~ 9325977 (-)
CI01000001_09356265_09365557 SENP1 coding upstream 130817 9355167 ~ 9366268 (-)
CI01000001_09367413_09370794 NA coding upstream 142135 9366485 ~ 9370794 (-)
G18646 NA non-coding downstream 69740 9143103 ~ 9143691 (-)
G18645 NA non-coding downstream 70548 9142615 ~ 9142883 (-)
G18499 NA non-coding downstream 107844 9104525 ~ 9105587 (-)
G18637 NA non-coding downstream 125039 9088076 ~ 9088392 (-)
G18635 NA non-coding downstream 128811 9084236 ~ 9084620 (-)
G18700 NA non-coding upstream 95113 9319463 ~ 9320136 (-)
G18698 NA non-coding upstream 129796 9354146 ~ 9355051 (-)
CI01000001_09374272_09375120 NA non-coding upstream 148104 9372454 ~ 9375120 (-)
G18694 NA non-coding upstream 176500 9400850 ~ 9407239 (-)
G18771 NA non-coding upstream 286642 9510992 ~ 9511210 (-)
G18223 NA other downstream 1284914 7926104 ~ 7928517 (-)
G18023 NA other downstream 1455911 7756501 ~ 7757520 (-)
G17911 NA other downstream 1960177 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 2276208 6931621 ~ 6937231 (-)
G17789 NA other downstream 2323017 6837525 ~ 6890414 (-)
CI01000001_09804494_09811219 NA other upstream 585307 9804429 ~ 9811219 (-)
G20136 NA other upstream 1314677 10539027 ~ 10539850 (-)
CI01000001_10862471_10864514 NA other upstream 1637875 10862225 ~ 10865770 (-)
G20230 NA other upstream 1797777 11022127 ~ 11028777 (-)
G20319 NA other upstream 1886487 11110837 ~ 11114747 (-)

Expression


Co-expression Network