XLOC_022365 (ctdsp2)


Basic Information

Item Value
gene id XLOC_022365
gene name ctdsp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24669035 ~ 24682244 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044124
TTCGCCTGGATTCTCCATGTTGTTGGAGAAAAAGTGAGGGCTTTACCTAGACTAGAGGGGGCTATGGATAAATATACAAGCGATAAAGTAAACCGAGACGCGAAGCCTAGAAAATAGCAGATaagaaaaaacacaacaaagtGTCATGCCCCTCCCATGTGGAAGAGAATAGAAGGcgggaataaataaatatcaaaataatttGTCGCTGTAGGTTTGAGATTGTTTGCGCCAACGGAAATTATTCATTTCAAGCCTCGCTAGCTTTTAATGCCACTAAATGCGGACCGACTGTTTGTCGCTGGAAAAGGTTGGTTGGACGTTGAGGGCTGTGCGTTTGTTAGATGGAAAGTTCTATCATCACTCAAGTGCAGAGAGAGGATACTCGGTTGTCTTCGAAAACAGATCAGGTGAATAAAAGTTCGCCTCAGAAACCTGGGAGTCGGAATATCTTCAAAAAGCTCATCTGTTGCCTTCGAGCTCAAGATGCCCAGCTGCCAACTTCACCTACCCATGATGCCTTGCTAGAGCCTGAGGACAATGGGACCTTTGCCAAAATACCAGGCGAGAGTCTGCTGCCAGCAGTGACCTCTCACGACCAGGGGAAGATCTGTGTGGTCATAGATCTGGATGAAACACTGGTGCACAGCTCCTTTAAGCCAATAAGCAATGCAGATTTCATTGTGCCTGTGGAGATTGAGGGGACCACACACCAGgtgtatgtGTTGAAGAGGCCGTACGTGGATGAGTTTCTCCAGCGGATGGGGGAACTGTTTGAATGTGTTCTGTTCACTGCTAGCCTTGCTAAGTATGCAGACCCTGTGACAGACCTGCTGGATCAGTGCGGTGTGTTTCGGACGCGCCTCTTCCGTGAATCTTGTGTCTTCTATCAAGGCTGTTATGTGAAAGACCTGAGTCGCCTTGGCCGTGAGCTCCACAAAACCCTGATCCTGGACAACTCTCCTGCCTCCTACATCTTCCACCCTGAGAACGCTGTTCCAGTACTGTCGTGGTTTGACGATTCGGAGGACACCGAGCTGCTTCACCTCATCCCAGTATTTGAAGAGTTAAGCCAAGCTGAAGACGTCTACAGCAGACTCCAACAACTCAGGGCTCCATAATCCATACGCTAAACCTCCATGTTGAGTAGCACTGACTGCCAATCAGACTCAAACAGCAACGCAAACGGTAAGCcaagaggaaaaaaagaaacagagGCCAGAGCTTGCCTTTTGCAATAACGATTTACGATTTTTATATTCCTTTTTTACTTTTCTATTCATTTTTTAAGTTTATAAGGACATGTGTTGGGAGATTAAAACACTTGACAGGGTCTAATCAAGTCCAGAATGCGCAACAGTGAAGCTGAAGCCGCTGTATTTTGTTACTCAGCTCCGCACAACTGACTTGAGGCCAGTCTCTCGCTCTCTCTATGCAAGATCTACCTGAACTCAACCTCACTTTTATCAGCATTTATAATCATCTTCTTAGTGTATTCCCAATTCTAGCAAAGGCCAGAGAAAATGAGAACTGGATCACACGTCAtgctatgcatttttttttttccataaatgcAAATGTGACACCAAGCACCCGTTCATCCTTGAGTCTTATTCATTTAAGCAAGGCCTTGTTTACTTTTCTACGGTCACTGAGGTGACTAtcgttttttaaaaacactgttatatGTGAATTATGACTACATACATACCTTGACACTTCCTGTATTCATCTTAAAGTGGCCTTATCTCTGCTTCAAGTGTACTTGATGGGAAGCAGAATTAACACCACGGAATGAACCAAAGAGATTTATCTAGTTCAGTCTCTCTGCTGTATTTCTGCAGACAATTTACTTGTGTGTTTTCTCATCTTATTTGTATATTTGGTCGAACTTGAATTGAACTTGAAATGTCCATCTCTGATGCAGATCAGATTCTCCATCGTGTATTATTTAAAGaccatcatgtttttattatgagtTGTTTTTACTGTAGCACAAGCATTTTAAAAATGGCCATGATTTTTATAGACACAACAAAGTGTTGCCTTTCTGTTCTAAAATGTGCCCTGATAAGGCCTGTGTTATCATATTTTTGACTTTTGTATTGATGACAATAAATTTTTCTCTGTGCAACATG
>TCONS_00044125
AAATTATTCATTTCAAGCCTCGCTAGCTTTTAATGCCACTAAATGCGGACCGACTGTTTGTCGCTGGAAAAGGTTGGTTGGACGTTGAGGGCTGTGCGTTTGTTAGATGGAAAGTTCTATCATCACTCAAGTGCAGAGAGAGGATACTCGGTTGTCTTCGAAAACAGATCAGGTGAATAAAAGTTCGCCTCAGAAACCTGGGAGTCGGAATATCTTCAAAAAGCTCATCTGTTGCCTTCGAGCTCAAGATGCCCAGCTGCCAACTTCACCTACCCATGATGCCTTGCTAGAGCCTGAGGACAATGGGACCTTTGCCAAAATACCAGGCGAGAGTCTGCTGCCAGCAGTGACCTCTCACGACCAGGGGAAGATCTGTGTGGTCATAGATCTGGATGAAACACTGGTGCACAGCTCCTTTAAGCCAATAAGCAATGCAGATTTCATTGTGCCTGTGGAGATTGAGGGGACCACACACCAGgtgtatgtGTTGAAGAGGCCGTACGTGGATGAGTTTCTCCAGCGGATGGGGGAACTGTTTGAATGTGTTCTGTTCACTGCTAGCCTTGCTAAGGTATGGAAACATAACATTCCTGTAGAAAATAAGAGTAGAAAGCCCTCATTAGATGCTTGTTGGCTAGCATTCTAGAGTTGTGTAGTAACCCACGGCTGTGCTAGTATGCAGACCCTGTGACAGACCTGCTGGATCAGTGCGGTGTGTTTCGGACGCGCCTCTTCCGTGAATCTTGTGTCTTCTATCAAGGCTGTTATGTGAAAGACCTGAGTCGCCTTGGCCGTGAGCTCCACAAAACCCTGATCCTGGACAACTCTCCTGCCTCCTACATCTTCCACCCTGAGAACGCTGT
>TCONS_00044127
AGCAGTcttatttaaaacagattttcTGTTTTCTGTGCAACGTGTGCCATCTCTGGAAAGGGGCGGCTGAGCATTTGGTCATTTTGAAGTTGATAGATGCCACATTTACTGgcgaaaaacatacattttattgcagttctctaaattatttaaaagatCCATCCAGCTTTATACAGTTGATGTTAATGTATCAAGCTGATGGGTGAATGTCTGTTTTACCAAACTCAAGTGGTTGATTGTCAATATATATTAGTAATTAATAATGTGCTCTGAGTGGGGTTTTGACAGTGATGTTTAGTGAGGTTCAAGTGGAATTGTTGATAAAGCATGCAACATGAGCCTTTTTTATGCCCTGTTTATGCAATGCAATTATCAGCGGGACTAATAGATGCAAATTAAGCAATTGTATTGTTTTCTAACAGATCAGGTGAATAAAAGTTCGCCTCAGAAACCTGGGAGTCGGAATATCTTCAAAAAGCTCATCTGTTGCCTTCGAGCTCAAGATGCCCAGCTGCCAACTTCACCTACCCATGATGCCTTGCTAGAGCCTGAGGACAATGGGACCTTTGCCAAAATACCAGGCGAGAGTCTGCTGCCAGCAGTGACCTCTCACGACCAGGGGAAGATCTGTGTGGTCATAGATCTGGATGAAACACTGGTGCACAGCT

Function

symbol description
ctdsp2 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Acts upstream of or within neuron differentiation. Is expressed in brain; eye; fin; integument; and muscle. Orthologous to human CTDSP2 (CTD small phosphatase 2).

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0005575 cellular_component cellular_component
GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-184 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Acts upstream of or within neuron differentiation. Is expressed in brain; eye; fin; integument; and muscle. Orthologous to human CTDSP2 (CTD small phosphatase 2).

Ensembl:

ensembl_id ENSDARG00000036102

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044124 False 2138 mRNA 0.43 7 24669035 24682244
TCONS_00044125 False 863 lncRNA 0.49 5 24672168 24682006
TCONS_00044127 True 668 lncRNA 0.41 2 24676137 24677634

Neighbor

gene id symbol gene type direction distance location
XLOC_022364 NA coding downstream 2423 24661306 ~ 24666612 (-)
XLOC_022363 NA coding downstream 57381 24608458 ~ 24611654 (-)
XLOC_022362 tmem240a coding downstream 86429 24571812 ~ 24582606 (-)
XLOC_022361 NA coding downstream 121471 24545239 ~ 24547564 (-)
XLOC_022360 atp13a2 coding downstream 126083 24511417 ~ 24542952 (-)
XLOC_022367 sdf4 coding upstream 11289 24693533 ~ 24699400 (-)
XLOC_022368 syt6a coding upstream 120655 24802899 ~ 24856025 (-)
XLOC_022369 CU041397.1 coding upstream 167243 24849487 ~ 24849604 (-)
XLOC_022370 CR376748.1 coding upstream 197983 24880227 ~ 24926348 (-)
XLOC_022371 zbtb48 coding upstream 259055 24941299 ~ 24955155 (-)
XLOC_022359 NA non-coding downstream 160213 24507854 ~ 24508822 (-)
XLOC_022358 NA non-coding downstream 168907 24496153 ~ 24500128 (-)
XLOC_022348 NA non-coding downstream 481859 24184521 ~ 24187176 (-)
XLOC_022373 NA non-coding upstream 411629 25093873 ~ 25094328 (-)
XLOC_022376 NA non-coding upstream 620486 25302730 ~ 25304019 (-)
XLOC_022379 NA non-coding upstream 1101451 25783695 ~ 25786084 (-)

Expression


Co-expression Network