RNA id: TCONS_00044127


Basic Information

Item Value
RNA id TCONS_00044127
length 668
lncRNA type retained_intron
GC content 0.41
exon number 2
gene id XLOC_022365
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24669035 ~ 24682244 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAGTcttatttaaaacagattttcTGTTTTCTGTGCAACGTGTGCCATCTCTGGAAAGGGGCGGCTGAGCATTTGGTCATTTTGAAGTTGATAGATGCCACATTTACTGgcgaaaaacatacattttattgcagttctctaaattatttaaaagatCCATCCAGCTTTATACAGTTGATGTTAATGTATCAAGCTGATGGGTGAATGTCTGTTTTACCAAACTCAAGTGGTTGATTGTCAATATATATTAGTAATTAATAATGTGCTCTGAGTGGGGTTTTGACAGTGATGTTTAGTGAGGTTCAAGTGGAATTGTTGATAAAGCATGCAACATGAGCCTTTTTTATGCCCTGTTTATGCAATGCAATTATCAGCGGGACTAATAGATGCAAATTAAGCAATTGTATTGTTTTCTAACAGATCAGGTGAATAAAAGTTCGCCTCAGAAACCTGGGAGTCGGAATATCTTCAAAAAGCTCATCTGTTGCCTTCGAGCTCAAGATGCCCAGCTGCCAACTTCACCTACCCATGATGCCTTGCTAGAGCCTGAGGACAATGGGACCTTTGCCAAAATACCAGGCGAGAGTCTGCTGCCAGCAGTGACCTCTCACGACCAGGGGAAGATCTGTGTGGTCATAGATCTGGATGAAACACTGGTGCACAGCT

Function

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0005575 cellular_component cellular_component
GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-184 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Acts upstream of or within neuron differentiation. Is expressed in brain; eye; fin; integument; and muscle. Orthologous to human CTDSP2 (CTD small phosphatase 2).

Ensembl:

ensembl_id ENSDART00000147432

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045012 lncRNA downstream 9525 24661306 ~ 24666612 (-) True XLOC_022364
TCONS_00044123 lncRNA downstream 64483 24608458 ~ 24611654 (-) True XLOC_022363
TCONS_00045011 lncRNA downstream 167315 24507854 ~ 24508822 (-) True XLOC_022359
TCONS_00045010 lncRNA downstream 176009 24496153 ~ 24500128 (-) True XLOC_022358
TCONS_00044116 lncRNA downstream 182850 24492185 ~ 24493287 (-) False XLOC_022357
TCONS_00045013 lncRNA upstream 416239 25093873 ~ 25094328 (-) True XLOC_022373
TCONS_00045014 lncRNA upstream 625096 25302730 ~ 25304019 (-) True XLOC_022376
TCONS_00044147 lncRNA upstream 1093447 25771081 ~ 25774562 (-) True XLOC_022378
TCONS_00045015 lncRNA upstream 1106061 25783695 ~ 25785905 (-) False XLOC_022379
TCONS_00045016 lncRNA upstream 1106061 25783695 ~ 25785982 (-) False XLOC_022379
TCONS_00044121 mRNA downstream 93531 24571812 ~ 24582606 (-) False XLOC_022362
TCONS_00044120 mRNA downstream 128573 24545239 ~ 24547564 (-) True XLOC_022361
TCONS_00044118 mRNA downstream 133185 24511417 ~ 24542952 (-) False XLOC_022360
TCONS_00044119 mRNA downstream 133981 24540479 ~ 24542156 (-) True XLOC_022360
TCONS_00044117 mRNA downstream 182369 24492585 ~ 24493768 (-) True XLOC_022357
TCONS_00044128 mRNA upstream 15899 24693533 ~ 24699400 (-) True XLOC_022367
TCONS_00044129 mRNA upstream 125265 24802899 ~ 24825863 (-) False XLOC_022368
TCONS_00044130 mRNA upstream 125467 24803101 ~ 24856025 (-) True XLOC_022368
TCONS_00044133 mRNA upstream 263665 24941299 ~ 24955155 (-) False XLOC_022371
TCONS_00044134 mRNA upstream 271008 24948642 ~ 24952264 (-) False XLOC_022371
TCONS_00044126 other downstream 834 24675207 ~ 24675303 (-) True XLOC_022366
TCONS_00044122 other downstream 93716 24571856 ~ 24582421 (-) True XLOC_022362
TCONS_00044112 other downstream 231883 24443182 ~ 24444254 (-) False XLOC_022355
TCONS_00044095 other downstream 508820 24148338 ~ 24167317 (-) False XLOC_022346
TCONS_00044084 other downstream 1812566 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044131 other upstream 171853 24849487 ~ 24849604 (-) True XLOC_022369
TCONS_00044132 other upstream 202593 24880227 ~ 24926348 (-) True XLOC_022370
TCONS_00044148 other upstream 1111498 25789132 ~ 25792981 (-) False XLOC_022380
TCONS_00044178 other upstream 1998018 26675652 ~ 26675770 (-) True XLOC_022392
TCONS_00044183 other upstream 2141480 26819114 ~ 26821768 (-) True XLOC_022395

Expression Profile

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