RNA id: TCONS_00045012


Basic Information

Item Value
RNA id TCONS_00045012
length 4564
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_022364
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24661306 ~ 24666612 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttttttCATACTTAAAAAGGTTTTTTATTGAGTTGCATGAGTGATGGCGATTGCTTAGAAAGGAGATTATGAAAACACATTTATGGCTTTTGCAGGACAGAGTGAAAACAAAAATCAGATAGCAccttatataaacattttacagatatattaACAACTTCATCATAAATTCTTTTGTAAACATACCAAACTAATATGAAATATTCCTGACAATTACAACAAAGTAAATAACAAAGGTTATAACGGCAGGCAAATCAGGGAACTACGATAAGAACACAAActacttataaaaaaacaaaaaaacatgtaaaaataaaaataattttgtgacAAATCAAGAGAGTGACATGCGTATAAGATTGACTATAAAATTCATTTACCTCTACAAAAAATCTTGCACAGGCTGTTGGatgacaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttataagcATATATGTCAGGGAATGTTTCTAATTAAGTCTTTTGTTGTGGTGGTTTCATAAAAACAGCTATTGAGGTCAGCACAGATTAGAAAGGATTCAGACTGTACTACTAATCTATGGCTTTTTGAGCAACCACTTGAAAAATGGAAAGTttagttattgatttatttttgcctGTAATCCATTTTGCAGGATTAGCATCGTCAAACGCATGCAACGCACCTTGACTTGAATCGTGCCAAAATGCTTTAGCCTGAAGAAATCCAATGGATTTGTGGGgggaaaaatgaataaaatcacaACCATTTCCCAAAGAAATGCTGAGTTCCCAACATGAAAGCCGGCCGGCTGAAGGTTCATTTCTAACAGCTGTGGAAAGATGCGTAAGGCAGAGTCAGCGTTATGTCGACAGAAATCATCAGCCACCTTTTTCCGAATTGGTTGGTTTTTCTTTCATGTCTGGTCAACCAGAGACAAGCTTTGTTAAATTTCGCTGAGTGACCCAACAAAACAGTTCAGAATCAGGTCATGAGCTCAAGTTTCTTTAAGGGTGCGTTCACACTTTGGTCCGGaccaaaaaacattaaatatatactGTCATTTTTAAGACTGAACCGTaagaaacaaaaccaaaacaacggcttcaatgacttttttttttggtgaaagtACTCATCAGACATCCAAACAATGTTGTGTGTTGGGATAAACATACAGATGATGCCATTTTGATCAGTTGAGAACTCAAAGTAGCTTATAAAGGTTTAAAGGAGTGAAAAGAGGGGCAGGAATTCCTCAACTGAACACAGAAATGTAGATCTGAGCAATGGAGACATGATTACGATGCCTGGATTAAACTATGATGTGAGGAATCTTGTTTCCGCCACTGCATAAAACAGATAATCGTCACTTTTTTCTCACAATTGTGTTGTAAGTCAGAATAGTAAGAAACAGACttgtatttgtctttttttaattccCTTAGAAATGGACTTTATGTCTGCGCTGATAGCTCGTGTTGGGGGAACGCATTACTAGTAACTTGGGTTAGGTGATAATactacttttctaagtaacgagtaaagtaaggcattacttttaaaaactaaataatgaaaTTTGAGTTACTTTATAAAATGTAATGCGAGTTACTTTTTAAGTTAGTTAAttcgctttttaaaaaataaattgctgaattaaagtgAATGTAGTCAGGAAATAGGAAATTAGGAAATagtctcattattttgaacacatggaagaaaaggaaaagaggattatctgaatggCAGTGATTTTATCTTTTTATAAGACAAAAAGTAGAAAAGTAGCAAATGCATTGCTTAAGTTTTATTCGTTATTCTGTAAATATGGCTTGTAtagggtcaggaagttctccaaagataacattatcctacattcatttttttaattagctttttaaaggtaaatgaagatTATACAGTGCGTTGtgaattgcagagctcctctttaaaaaaaaaaaaaaagcagaaaaaaacctTCAAGTTTTGAaggagatcaagcctcagccaggtctgaaaaatgcaaaagtaactcaaaagtaacaaaACGCATTACtcaccataaaaagtaactaagtaatccaACTAGTTGCTTTTTTgggaagtaactcaatattgtaatgcattactgtcTAAAGTAACGTTCCCCAACACTGCCGATAGCCTTGTGGGCAGTGAGCCAATATATATTGCCACTGCGTTTCGAGCATCCCAAGTTCCGAGTCCTAGTGCATAGATTTCAATAATTCGCAATTATGAGTTTAGAAATTATAGTTATGAGGAAAGAGATCAGAAATGTAGCCAATTCTCAATATTTATTTCATAACTCAAtgccttaaaaatatatatcttgcAGTAGGCCAGCATGATTAATCCTTTTTAAACCGAAATCGCAAAATCAAAACATAAAATCTGcgatattcatttaattaaatattgtaaagcatATTGTTTTTGAAAGTTCTGAAAGTTCGTAAGCACATTATCTCAatcaatgtaaaaaatgtaacacaatctaaatgtaaaagtttaaaataatagtttcatTCTCAATTAGTCATAAAAACTGACCTAACAACTTTATTTGACAAAAATGACAACAATGTTTAAGCGGTTTTAAAACCTGTAGCTCTTTTATGTAATGGttgtaaatcacattttaaatcgCAAATCGAAATTTTGATCAGATAAATCGCAATTTGACTTTTTTCTCCAAATCGTGCAGCCGTCTTAACTAGCAAATGTAAAATCGAAATGCAATTCTCAGAAAAAAAGTCAGacaaattactttttttgtcattttatgttTGTGGCGGAAACAGTCTTATATACTAACAGCCAACATTGTGTGACTATGGTGTAAAAAATTATCCTTATTGAGCAGTCTGTCCTTTCTGTGTGACATCATgttctgtttttggtttgtttagatgTCTTTGGTTGGTGTTGCATTCACATTTCAGTCAAAGCGGAGCAGAGTCAGCTCATTTGGTGTGCTCCAAGGTTCAGCAGGCAGCGTTCAGACTTGTTCAAATAAACTTACATTTGTTCAAAttaagtgtgaacacaccctaaaatcaaaatgtaacAAACAAAACGTCACGGGCAGATCTGGAGAACAAACTAACCTATAAACACACATCAAGACAAGTACacaaacagtaaaacaaacaaacaaaagagatATCAGGCACAGTACGTTTGAATAGGAGTAACCAATAAAGGGTGGTCTTGTCTTACCACACTattcaaagaaaataaataaatagaattcaCCATGGAACACTGTAGCTCTGTCTTATATGGATCGCACTTACTGTGTGTTGCTGCTACtcgcttttttcttcttttaatcaCAATGAATCAAAATCTACGGCTGATGCGAATTTTACAcaaatgcgttttttttttttttcatgaaatatgcatattaaattaacaataataaaaataaaaaaaatcacatatattAACATTCACTTTCCAATAACTTTACACAAATGTTACCAAAGATGTGTGCACTGATGAGAACCAGAACATTCTGTGAGATTAAAAACTGGAAGACTGAGCTTGGATTTCGTTCTCGAAAATGTAACCGAACGACAACATGAGCGGAACATCACTACTTTTGCTACCACTTGAAACAGAGAGCACGAATGAGATGATGAAAAGTCAGTATAATGGGCTTAAATGACACCACCACAAACAcactggaacaaaaaaaaaaaaaagaagtccttCTTCCGACCATCAGGATAGAAACGTGGGTATTTTGTGTAAGCAGGGGGGTTTCACGGTCAAAAAAAATGGGTTATCCTGTAAGCGTCCACCTTCGGAAAATATCTGAAGCGTCACAAGAATCCAGGGGTGGGGGTTAGAAAAAAAGGGATGGTACCTGGTTATCATTCGCTCAGCCTTGACTGCCACACGAGGACAGGCTGTCGTAGAGGGAATCGCTCAGAGACTCGGGCGTCTCTAGGACCTGCGGGTGGTTTGGGGACAGGCCGTCGTCGGGTCGCTCTCTTACCAGCTCCAGACCAGTGTCCCGCACCAGCTCAGGGTTTCCAGGAATGCGGCTCTTGACTCTGCGTGTCTGACTGGGCTGAGGAAGACTTCTTGGATCTCCCTCACGACTGGCCACTGAATCACTAGTCTTGTTGCGCTACGAATATAAAAATATGCTATGAGTAACACTGAAATGTATGCCATAATGCAGTAAATTAGAGATCATTTTCTGAAATTCTGAGGTCACTGCAAGGTCCTATATTTGAAGTGATcctaaaaagctttttttaagcatatttcttGAGTTACAAATATGATAAAACATATTGCCATCAGATTTAGAAGCACAGCACACAAGCATCACAGGAAATGTGAACCATGACCTGACGTGGCTGAAGAGAAGACATAGGCGACGATGTTTTTAGAGTTTTTGTTTGCACACAAATGTGTTGTTCGAGCTTTGCACAGtaacagttgaaccactgaatgTCACGTTGaatgtttttgtttccttttctggactttaaacatCTCCTGACCCTTGCTGTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044123 lncRNA downstream 49652 24608458 ~ 24611654 (-) True XLOC_022363
TCONS_00045011 lncRNA downstream 152484 24507854 ~ 24508822 (-) True XLOC_022359
TCONS_00045010 lncRNA downstream 161178 24496153 ~ 24500128 (-) True XLOC_022358
TCONS_00044116 lncRNA downstream 168019 24492185 ~ 24493287 (-) False XLOC_022357
TCONS_00044103 lncRNA downstream 449449 24210651 ~ 24211857 (-) True XLOC_022349
TCONS_00044125 lncRNA upstream 5556 24672168 ~ 24682006 (-) False XLOC_022365
TCONS_00044127 lncRNA upstream 9525 24676137 ~ 24677634 (-) True XLOC_022365
TCONS_00045013 lncRNA upstream 427261 25093873 ~ 25094328 (-) True XLOC_022373
TCONS_00045014 lncRNA upstream 636118 25302730 ~ 25304019 (-) True XLOC_022376
TCONS_00044147 lncRNA upstream 1104469 25771081 ~ 25774562 (-) True XLOC_022378
TCONS_00044121 mRNA downstream 78700 24571812 ~ 24582606 (-) False XLOC_022362
TCONS_00044120 mRNA downstream 113742 24545239 ~ 24547564 (-) True XLOC_022361
TCONS_00044118 mRNA downstream 118354 24511417 ~ 24542952 (-) False XLOC_022360
TCONS_00044119 mRNA downstream 119150 24540479 ~ 24542156 (-) True XLOC_022360
TCONS_00044117 mRNA downstream 167538 24492585 ~ 24493768 (-) True XLOC_022357
TCONS_00044124 mRNA upstream 2423 24669035 ~ 24682244 (-) False XLOC_022365
TCONS_00044128 mRNA upstream 26921 24693533 ~ 24699400 (-) True XLOC_022367
TCONS_00044129 mRNA upstream 136287 24802899 ~ 24825863 (-) False XLOC_022368
TCONS_00044130 mRNA upstream 136489 24803101 ~ 24856025 (-) True XLOC_022368
TCONS_00044133 mRNA upstream 274687 24941299 ~ 24955155 (-) False XLOC_022371
TCONS_00044122 other downstream 78885 24571856 ~ 24582421 (-) True XLOC_022362
TCONS_00044112 other downstream 217052 24443182 ~ 24444254 (-) False XLOC_022355
TCONS_00044095 other downstream 493989 24148338 ~ 24167317 (-) False XLOC_022346
TCONS_00044084 other downstream 1797735 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044083 other downstream 2010728 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044126 other upstream 8595 24675207 ~ 24675303 (-) True XLOC_022366
TCONS_00044131 other upstream 182875 24849487 ~ 24849604 (-) True XLOC_022369
TCONS_00044132 other upstream 213615 24880227 ~ 24926348 (-) True XLOC_022370
TCONS_00044148 other upstream 1122520 25789132 ~ 25792981 (-) False XLOC_022380
TCONS_00044178 other upstream 2009040 26675652 ~ 26675770 (-) True XLOC_022392

Expression Profile

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