XLOC_022378 (si:dkey-21c19.3)


Basic Information

Item Value
gene id XLOC_022378
gene name si:dkey-21c19.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 25770401 ~ 25779995 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044146
GGAAGAAGCGGGAGGCGTTAATGAAACTTTGTGTACTCAACATCTCATTCACGGAATCACCTGCTGTTTCTGAGAAAGTCGAGTCCGTTAGAAAAAGATAGCTACAACTGATACTAACACTCGCGGGCAGCTCGCCGGAGCTCGTTAAGCACAGTTATATTTAAAGCTGAGCTGTTTTCTCGCGTGTTAGCTGTTGGTTAGCTGGTTGAGCTAAAGATCAGCGCTGTGGGTTTATCTGGACTGGTTTAGTCGTGTTCACCTAGAGGATTCAGCTACTTTTATCTCAACAAAGCTGGTTAGCAGTGGCGTGCGGATGAAGGGCAGGGGGAGCCCGCGTTTGGGACTGCGCTGACAGCCCTGAGGATTTATCCTGCTCATAATCGAGGCTTTCAACATGTTTAATAAGATCTACGAATGGTTTGGAACCGGCTTCGCTAGTCTCAGAAATGGAGCTCCTGCCGGTGCAGTCAATGCTGATGCCGCGAGAGTGGATCAGGACGGGACGTCACGGAGAAAAAGATCCATAAACTGTTTAAATGATGGAGACCAGGAGGAGGAGAGAGTGGTGAAGAAATTCAGAATGGGAGATATTATGGATACGGTGAAAAATGCAGCTGAAGGAGTAAAGACCCATGGTTCAAATGTTGCATTTTGGGTTAAGAACAGTGTGAGTGCTAATTCGAGGAACATGCTGCCGACATCACCAGGTCCTCCTCAGTCAGGAATACCATCAGGACCTGCAGCCAATTCTACATCTACATCTTTGTGGACAGAAGACAAGCCACATGACAGACTTCAGGACACATTTGTGGCCCCATCTAGTTCAGTTGAGTGGAGGACAGTCACAAAATCTGACTCCTTAAGGACTGAGCACTCAGTGACCATATCAAAAACAAGCAGAAGACAAGTTTGTATGGAACATCCACCCCATGAGATGTACAAAGCTAATGGACACTCTGTAAATTTACCATCTTCCTCCACGCCAAAACCATCCCCATCTCCACGCTTGGGCAGGTCCCTTTATCACCGACCACAAagCATACTGTCATCGCCTGAAACCAGTTCAGGAAAAGCCACGTACACCAGCCTGTATGAGAAGACCTTTCCCATTCGAGTGGTCCAGAGTTCTTTACCTGGCAGCTCAAACCGTCTTCTCCGGGCCAGAGCCCGCTCTACAGCACAAGAGTCAGTACGTGAGGAGGAAAAGGAGGTTTACAGGCAGCTGCTAGTCATGGTGTCTGAAGGCCAGTCTTCTTTCCTTCATGATGGAAGTTCTCACTCCAGCATTCGCTCGCATCGAGATTTCTCCAGCTTTCTGTCGTCCAGTCGAAGTCTCCTTCATTGTGCCTCTCCAGCAGGCTCTGGTGCTGGTGTTTCATCCTATGGGTTGTCCAGTCCACCACCGAGTCCCCAGCCTGGCTCAAGCCAGACCTCCAGTGCTCTGCCCAGTCCTGGTGCAGCCTCCAGCCTAGCAGAGCCTCCGCTTTGGGCCCATGACCTTGAGCCCAGTGCTAAAGGACCAGATGTTCCCTCCGCTCCTTCTCCAGCGGCTCTTCAGGATACCTCTTCTCAGGACACTCAGTCTTCAGCTCATGATGGAGATTCAGTCATTTTCGTGAAGGAGCAGCAGGGAAAGAAGCCAGAGAGCTCAAGTGTGCCATGCTTCCAGGCTGAATTGTGGATCAAAGAATTGACAAGCCTCTATGACTCTCGAGCTCGGGAGAGACGGAGGTTGATTGAAGAACAGGAGGCTCTGGCCTCTCAGCTTCTACGCCagCGCCTCTCTGGAGAAGGTCGAGCTTCCCCAGCAAGTGTTGAGCTGAAAGTTCGGGTTCCACTAGAAAAGGAGGTTCCTATTGCTGCTGTTATCAAAAAACCTCAGCCAATTAAGGAGGAGCCTGAATTCCCAGAGTTAACAGAGGAAATGGAGAACGATGTGAGCAGAGCTCTCAGAGGTGGCAGTCAGGACGAGATTCTCAGCGAGGGCTTCCGACTCACCATCACCAGGAAAGACCTGCAGACACTCAGCCATCTCAACTGGCTCAATGACGAGgttATAAATTTCTACATGAACTTGCTGGTGGAGCGCAGTAAACAGCCCGATCTGCCATCCGCTTACACCTTCAACACCTTTTTCTTTCCCAAGCTGCGGAGCTCTGGTTACTCTGCTGTCCGCCGCTGGACCAAGAAAGTGGATATTTTTTCTGTAGACCTCATTCTGGTGCCTGTCCACCTGGGGGTGCACTGGTGCTTGTCTGTGGTGGATTTCCGTAACAAAAGCATCACTTACTTTGATTCCATGGGAGGAAACAACGATGAGGCCTGCAGGATTTTATTAAATTATCTGAAACAAGAAAGTGAAgacaaaaaaggacaaaaaatgGAAACCTCAGGATGGAGCCTAAAAAGTAAAAGACCCAACGAGATCCCTCagcaaatgaatggaagtgacTGTGGAATGTTCACATGCAAATATGCTGAATACATCACCAAAGACCGGTCAATCACATTCACACAGaaacacATGCCCTATTTCAGAAAGCGAATGGTATGGGAGATCCTGAACAGGAAACTGTTGcgataggattttttttttttttttttgtacagaacatatttttgtgttgtaTTGATATGAGAGATACCCAAGACGAATATGAGGTGCACTCATTCACTGGTCATTTCTATGCTATCTGAATGAAGTTCTCATAAACCTAAAGGACAGTTTCAGTCTTTAAGAGTCAGGGCAGTGCTTTTATGCTCCTTTATATTTCCTTATAACTTGACGTGGATTTGCTCAGCCAGCGAATGTTGTTTGACTGACAATGGAAGGATgctgttttcatatttttaatcttttcttGTCCTGCCATTCATTTGCATTCTCTGTCAATTTGAGGCCTGTCTTAAGATGACTACAAACAATTACTGTTGGTTGGCAGGACTTAATTTCCAATCATCTGAAGTCTTAAATGTTACAGTAATATGATTACTGATTTTTAATGCCGATATCTTTTTACTCCGGTACTTGTAAAA
>TCONS_00044147
GTAGTACTTCTCTTTTTATCTACTCTTTAGTTTGTTAAAGTGAGTAGCTTCTCAAATAACTGTGTATTGTGTTTTCAGGACAAGCCTCTATGACTCTCGAGCTCGGGAGAGACGGAGGTTGATTGAAGAACAGGAGGCTCTGGCCTCTCAGCTTCTACGCCagCGCCTCTCTGGAGAAGGTCGAGCTTCCCCAGCAAGTGTTGAGCTGAAAGTTCGGGTTCCACTAGAAAAGGAGGTTCCTATTGCTGCTGTTATCAAAAAACCTCAGCCAATTAAGGAGGAGCCTGAATTCCCAGAGTTAACAGAGGAAATGGAGAACGATGTGAGCAGAGCTCTCAGAGGTGGCAGTCAGGACGAGATTCTCAGCGAGGGCTTCCGACTCACCATCACCAGGAAAGACCTGCAGACACTCAGCCATCTCAACTGGCTCAATGACGAGgttATAAATTTCTACATGAACTTGCTGGTGGAGCGCAGTAAACAGCCCGATCTGCCATCCGCTTACACCTTCAACACCTTTTTCTTTCCCAAGCTGCGGAGCTCTGGTTACTCTGCTGTCCGCCGCTGGACCAAGAAAGTGGATATTTTTTCTGTAGACCTCATTCTGGTGCCTGTCCACCTGGGGGTGCACTGGTGCTTGTCTGTGGTGGATTTCCGTAACAAAAGCATCACTTACTTTGATTCCATGGGAGGAAACAACGATGAGGCCTGCAGGATTTTATTAAATTATCTGAAACAAGAAAGTGAAgacaaaaaaggacaaaaaatgGAAACCTCAGGATGGAGCCTAAAAAGTAAAAGACCCAACGAGATCCCTCagcaaatgaatggaagtgacTG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016926 protein desumoylation biological_process
GO:0005634 nucleus cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0016929 SUMO-specific protease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6462 Predicted to enable cysteine-type peptidase activity. Predicted to be involved in protein desumoylation. Predicted to act upstream of or within proteolysis. Predicted to be active in nucleus. Orthologous to human SENP1 (SUMO specific peptidase 1).

Ensembl:

ensembl_id ENSDARG00000078574

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044146 False 3036 mRNA 0.47 18 25770401 25779995
TCONS_00044147 True 840 lncRNA 0.47 7 25771081 25774562

Neighbor

gene id symbol gene type direction distance location
XLOC_022377 lrp1ab coding downstream 83447 25452656 ~ 25686954 (-)
XLOC_022376 NA coding downstream 466382 25302730 ~ 25304019 (-)
XLOC_022375 idh3g coding downstream 635296 25121998 ~ 25135105 (-)
XLOC_022374 CR847803.1 coding downstream 671488 25095568 ~ 25098913 (-)
XLOC_022373 NA coding downstream 676073 25093873 ~ 25094328 (-)
XLOC_022379 NA coding upstream 3700 25783695 ~ 25786084 (-)
XLOC_022380 BX005414.1 coding upstream 9137 25789132 ~ 25793093 (-)
XLOC_022381 fitm2 coding upstream 16353 25796348 ~ 25798099 (-)
XLOC_022382 CR318614.1 coding upstream 71918 25851913 ~ 25891426 (-)
XLOC_022383 ada coding upstream 166453 25946448 ~ 25976656 (-)
XLOC_022370 CR376748.1 non-coding downstream 844053 24880227 ~ 24926348 (-)
XLOC_022369 CU041397.1 non-coding downstream 920797 24849487 ~ 24849604 (-)
XLOC_022366 dre-mir-26b non-coding downstream 1095098 24675207 ~ 24675303 (-)
XLOC_022392 CR855310.1 non-coding upstream 895657 26675652 ~ 26675770 (-)
XLOC_022393 NA non-coding upstream 969412 26749407 ~ 26759560 (-)
XLOC_022396 NA non-coding upstream 1181015 26961010 ~ 27015160 (-)

Expression


Co-expression Network