XLOC_022393


Basic Information

Item Value
gene id XLOC_022393
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 26749407 ~ 26759560 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045019
CAGAGATGGGCGACACAGTCATTCATAGGAACCTTGACCCAAACGAGGATTAAAGAAACAGCCTGGGACGAAAACTTTGCACTGTAAGAATGCTGACTGGAATGAGTCCACTCCCTTAAAACACGTCTGTCACTCCCCGTCTGTGACTGTCACTCCCATGTACAAGCCCAAGAGAGAATGTGGTGTCTCCAGAACAAATAGGACAACTCATCACTTATGTTCTGGAGTGACAGGTATTAAGCTCTTGTTGAATCCTCGATGCCCCTGGCGAAGAGCCGCACCAGCTGACCGTGTATTCTGTGAAAAGAAGGAAAACATTCAAATGAAGAACATGTAAAGGTTTTGGTTTGAAACGCATAATCATTTATGATATTGATATCATTAACTATGATCTGCTCGTATCACTAGCCAAATCATTAAGCAAATGCTAAACCTATCAAAAGTTTGTGGTCGGTGGAGTGTTTTGCTTGATTTTTGTTTAAAGAAGTCTTTTATGAAGGATGATATCTATAATgaaagtgtattttttagaatgGTTGTAAATGTTTTAAGAACACTATCGAACAACATCacttaatttgttttgttcaaatgaaaaatgatgaaaaaaagttaCAGTATCAGAATCCAACTTGAGCAGAAAACTACAAATCTGAAGTTTGTGCTTTTTAATCAAAAGAAATGGAGTCCAGTATAATTAGTTTATTATGGAACCAGATCagatataatacaaaataaaaaaacaatttgtaaattcaaaacacaattcttaaatacAACACAATTTGTGAGTTCACAAgttaaaatcataaatatttttgcCAAATGAATTGAATTTGTTATGAACGTATTTAGGACTTACAAAtcaaatttgttaattttttgatTGCGTTTGAAATTAACAAattggatttgtttgttttttaattgttttgaatttttaaatcgaatttgtgtattttttttaaattgttttggatttacgagttggatttgtgtatttttgaatcgtgttttggaTTTCCAAAtcgaatttgtgtatttttgaattgtgttttggatttacgagttggatttgtgtgtttttgaatcgtgttttggatttacgaattggatttgtgtatttgaatcgtgttttggatttacgagttggatttgtgtatttttgaatcatgttttggatttataaattggatttgtgtatttatgtatcaTGTTTTGGATTAACaagtttgatttgtgtatttttgaatcatgttttggaTTTACGAGTtgaatttgtgtgtttttaaatcatgttttaaattcaccaattggatttgtgtatttttgaatcgtgttttgaagttacgaattggttttgtgtatttatgaatggtattttgaac
>TCONS_00044737
CCCGTGATATTGCTCTGAGTTGGTATCGGCCAGCTGAAGCGGGAGGCATAAATGTCCACTGCTCCCTTTTTCAAGCATTTGCCATTGACCGCAGAGATGGGCGACACAGTCATTCATAGGAACCTTGACCCAAACGAGGATTAAAGAAACAGCCTGGGACGAAAACTGTATTAAGCTCTTGTTGAATCCTCGATGCCCCTGGCGAAGAGCCGCACCAGCTGACCGTGTATTCTGTGAAAAGAAGGAAAACATTCAAATGAAGAACATGTAAAGGTTTTGGTTTGAAACGCATAATCATTTATGATATTGATATCATTAACTATGATCTGCTCGTATCACTAGCCAAATCATTAAGCAAATGCTAAACCTATCAAAAGTTTGTGGTCGGTGGAGTGTTTTGCTTGATTTTTGTTTAAAGAAGTCTTTTATGAAGGATGATATCTATAATgaaagtgtattttttagaatgGTTGTAAATGTTTTAAGAACACTATCGAACAACATCacttaatttgttttgttcaaatgaaaaatgatgaaaaaaagttaCAGTATCAGAATCCAACTTGAGCAGAAAACTACAAATCTGAAGTTTGTGCTTTTTAATCAAAAGAAATGGAGTCCAGTATAATTAGTTTATTATGGAACCAGATCagatataatacaaaataaaaaaacaatttgtaaattcaaaacacaattcttaaatacAACACAATTTGTGAGTTCACAAgttaaaatcataaatatttttgcCAAATGAATTGAATTTGTTATGAACGTATTTAGGACTTACAAAtcaaatttgttaattttttgatTGCGTTTGAAATTAACAAattggatttgtttgttt

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045019 False 1388 lncRNA 0.31 3 26749407 26759469
TCONS_00044737 True 856 lncRNA 0.33 2 26749873 26759560

Neighbor

gene id symbol gene type direction distance location
XLOC_022391 hspg2 coding downstream 23770 26543716 ~ 26725637 (-)
XLOC_022392 CR855310.1 coding downstream 73637 26675652 ~ 26675770 (-)
XLOC_022390 si:dkey-205h13.2 coding downstream 213352 26523998 ~ 26536055 (-)
XLOC_022389 si:dkey-205h13.1 coding downstream 226381 26503876 ~ 26523026 (-)
XLOC_022388 MAGI3 coding downstream 260785 26232185 ~ 26488622 (-)
XLOC_022394 galnt6 coding upstream 3778 26763338 ~ 26784771 (-)
XLOC_022395 adcy6b coding upstream 37475 26797035 ~ 26888217 (-)
XLOC_022396 NA coding upstream 201450 26961010 ~ 27015160 (-)
XLOC_022397 zgc:66440 coding upstream 281551 27041111 ~ 27061072 (-)
XLOC_022398 stat6 coding upstream 319306 27078866 ~ 27123180 (-)
XLOC_022380 BX005414.1 non-coding downstream 956314 25789132 ~ 25793093 (-)
XLOC_022379 NA non-coding downstream 963323 25783695 ~ 25786084 (-)
XLOC_022376 NA non-coding downstream 1445388 25302730 ~ 25304019 (-)
XLOC_022373 NA non-coding downstream 1655079 25093873 ~ 25094328 (-)
XLOC_022400 NA non-coding upstream 432396 27191956 ~ 27199095 (-)
XLOC_022408 CR354381.1 non-coding upstream 820604 27580164 ~ 27580292 (-)
XLOC_022412 NA non-coding upstream 893336 27652896 ~ 27675394 (-)
XLOC_022415 NA non-coding upstream 967735 27727295 ~ 27729454 (-)

Expression


Co-expression Network