XLOC_022400


Basic Information

Item Value
gene id XLOC_022400
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27191956 ~ 27199095 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044738
actgaagtaaaggtgaaatgactaaagttaaggtgtacctgataatagctgaagtgtgagccacagccattgatgttgaaacactgatgctaccaatcacccctcgcttgattattaaagtcttattccttggagggtcgagtggtcatgggacctcacctgggtttcacaactgactttggatctggtctgaaactgaagtatgctgaagatgccttttgcactctggaatttaagggccgtgttgcagacacaatttgtttgtctgtgctggagacctgaggggaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcaggtgctttttgggcaccagtttggagatggaagacagacgaagtcaaagaagcagagaagacacatcaaccagcaagtgtgtaaaattatcaggaaaataattgaccttgaatagacgactgcctaatttagcaagaagttttttctctctctctca

Function

GO:

id name namespace
GO:0043170 macromolecule metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044738 True 497 lncRNA 0.43 6 27191956 27199095

Neighbor

gene id symbol gene type direction distance location
XLOC_022398 stat6 coding downstream 68776 27078866 ~ 27123180 (-)
XLOC_022397 zgc:66440 coding downstream 130884 27041111 ~ 27061072 (-)
XLOC_022396 NA coding downstream 176796 26961010 ~ 27015160 (-)
XLOC_022395 adcy6b coding downstream 303739 26797035 ~ 26888217 (-)
XLOC_022394 galnt6 coding downstream 407185 26763338 ~ 26784771 (-)
XLOC_022401 scn8aa coding upstream 52531 27251626 ~ 27345425 (-)
XLOC_022402 dip2ba coding upstream 159627 27358722 ~ 27442544 (-)
XLOC_022403 atf7a coding upstream 247834 27446929 ~ 27479558 (-)
XLOC_022404 asb8 coding upstream 295996 27495091 ~ 27506161 (-)
XLOC_022405 larp4aa coding upstream 312614 27511709 ~ 27547931 (-)
XLOC_022393 NA non-coding downstream 432396 26749407 ~ 26759560 (-)
XLOC_022392 CR855310.1 non-coding downstream 516186 26675652 ~ 26675770 (-)
XLOC_022380 BX005414.1 non-coding downstream 1398863 25789132 ~ 25793093 (-)
XLOC_022379 NA non-coding downstream 1405872 25783695 ~ 25786084 (-)
XLOC_022408 CR354381.1 non-coding upstream 381069 27580164 ~ 27580292 (-)
XLOC_022412 NA non-coding upstream 453801 27652896 ~ 27675394 (-)
XLOC_022415 NA non-coding upstream 528200 27727295 ~ 27729454 (-)
XLOC_022416 NA non-coding upstream 571386 27770481 ~ 27772372 (-)
XLOC_022417 NA non-coding upstream 589274 27788369 ~ 27795923 (-)

Expression


Co-expression Network