XLOC_022405 (larp4aa)


Basic Information

Item Value
gene id XLOC_022405
gene name larp4aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27511709 ~ 27547931 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044206
GGTAAGGTGCGTGTCCCCTGTGTCCGCTTCGGTCGCCCGTTTAGGAATGCACCCTATGGCACAGGCGCTTGAGTAAATCGCGAGGAAGGCGCGTGAGGAACGAACTCGCTATTTTTGGCGCTCGCGCTGTCATTTTCACCAGTCGGCTGACAAACGTCGGAGCTTGCGCCGTAATTGTCGATGCATTGATAGCTAGCTAGCCAGCTAGTTAGCAGGAGAACTAGCCCATTCTGAGGCTAGCCAGCTTTCATCACCGAGCGCTCTATAAGTTCAGCTTCTTCTACCGGACCGCCTGCTGTCTGCGCATCTATTCTGGTGTATTAGCAAAGTACTCGATCAGCAGAAAGGGTGCGCCGAGGGGGGCAGAGGGAGAGCACGACGGAGGCGCGGTGAGCCAGGAGCGGCCGATGAGTTCAGACCAGGGCGGAGAGCCGCAGCTGCAGGAGGAGGCTGAGCCGGGACCCGAAACCCGTGGGGAGGACGAGATCGCACCCGGGACCGGGGGAGACTCAGGCGTCATGGTCACTGCTAAAGGAGCTGGTCTGAACCCTAATGCCAAGGTGTGGCAGGAGATTCCTGCCACACAAACTGAAGCTCCTGTTGATGGCACTGTGGCCTCCCCCTGGTCCCAGAACTGTACAGCTGAAGATACCGCTGTTGGTAAACTGTACACCCCAGGCTTCTCCACTCTTGAGGACAACAGCACTTCTGCTACTGTAGTAGGTGTGGTAAACGGTATGGATCCCCCTGACCAAAGCTTTCCAGTTTGTGAGCGCATTACAGCAACTAATGTGGATTCTAAGCTCCCCGAGGAACAGCCTGTCTCTGAAGAGTCTTTGCGTGAGTCTCTCAAGAAAGAATTGGAGTTTTGTTTCTCCAGGGAGAACTTATCTAAGGATCTTTACCTAATATCTCAAATGGACAGTGACCAGTTCGTCCCCATTTGGACAATTGCCAGCATGGAAGGAATCAAGGTCCTTACAACTGACATGGACCTCATTTTGGATGTCCTGAGATCATCTCCTATGGTTCAAGTTGATGAAAAAGGGGAAAAAGTGCGGCCAAATCACAAACGTTGCATCATCATTTTGCGAGAAGTCCCTGAAACAACACCTGTTGAGGAAGTGGAAGCCTTGTTTAAGAATGACAACTGTCCAAAGGTAATAAGCGTGGAGTTTGCACACAACAACAACTGGTACATTACATTCCAATCGGATACAGATGCTCAACAGGCATACAGATATTTAAGGGAAGAAGTCAAGACATTTCAGGGAAAACCAATCATGGCCAGAATAAAAGCCATCAACACATTCTTTGCGAAGAATGGCTACCGCAGCCTGGACTGCAGTGTGTATCCTCAGCAATCACACACTCCACCCCAGTACAACTCTCCGCTCTTCATGCAGCCTGTTTACAGCCCTCAGCAGCAGTACCCGCTTTACGGCATTGTACCGCCTACTTGGACGCCGTCTCCTACTCCATACTTCGAGACTCCCCTGGCACCTTTCCCTAACAGTGGTTTCGTCAATGGATTTAGCTCACCCGGACACTACAAAACTGGCTCAAATTCTCTCAACCTTAGCCGTCCCTTCAGCAGGAACCGTGTTCCACTCTATTCCAGAAAGAATGTAATAAATGCCTTCAGGAACCATGTGAAGCCTCAGACGAGGACTAATGATGGACTGTCTTCCACTGTGTCACCGGTGGCTCTGGTGGATGGACTGTCTGGCCTGCACAGTCCCCAGCCTCCCTCCAGTGCTGGACCCGTGCTGTCATCCGCTGACCTCAACTCCTCTTTTCCACATCTAGCTTCCAATGAGCCAACCGATGACGGCACCATGGCAGGACGAGGAAGGAGAACGACATACCGAGGCACTCGAAGGCGGCGAGATGATGACCGCACAACAAGACCAATCCCTCTCTCTCAAGTGAAGGTACCGCCCCCTAAGTTTGACCTAGCCGCCTCCAACTTCCCTCCGCTGCCAGGCTGCTCTGCCAGTCCGCAGGGGGAGCCTGTGCTGGAGAACCGCCTCTCTGATGTTGTACGGGGCCTGAACAGGGAAAAGCAACAGGATTCAAACAAAGAGTCCACTGTGAGTCCCACAGGCCCATCCTCAGAGGAGAGCGTCTCCAAGCCCACCCAACCTGTAGCTAAGATGAACGCTCACGTCCCTGATCCTGTCACCCCTAGCTCCAACCACCTGGAGAAGAAACCGGAGAAGGTGGAGCCTCCAGTCTATAAAGAGCCGCCTGTGACCTCTGCCCCCATCGCAGCCGTTCAGCCCACCCCTGCCCCAACAGCACCTGGTCCTAAGCTTCAGCCCAGCTCCGCCCTGCCTGCAGCCCCCCAATCTAACACTGCCCCCTCCAGTACCCCGGCACTGGAACCTCGCAAGCTCAGTTACGCTGAAGTATGTCAGCGACCACCTAAAGATCCCCCTCCTCCAGCATCCTCTTCCAGCCCCAACAATGCAAGCGCACAGCCTCTGAGAGAGCTGCGTGTCAACAAGGTGGAGGAGCAGGCCTCCAGTCCGGCAAGCAAACAGGAGCGGCCTCAGGAATCGGGGGGAAACTGCAAGGCCAGGGAGGGCCGGCCGGCCCGTGACTCCCAGAGCTTCTCTCGCAGCAACGGACCCCCCAGAAGCAGTACAGGGGGGTTCAAGCTACGAGAGCAGCAGAGACGCCCTCCCTTCGGCCATCGCGGTTCCCCCCAGGGAGGTTCCAGACACGCTGGAAAAGAGCAAAACATCCCACCCATATCGCCAAAGTAAAGACTCAACAG
>TCONS_00044207
CCTGTTTACAGCCCTCAGCAGCAGTACCCGCTTTACGGCATTGTACCGCCTACTTGGACGCCGTCTCCTACTCCATACTTCGAGACTCCCCTGGCACCTTTCCCTAACAGTGGTTTCGTCAATGGATTTAGCTCACCCGGACACTACAAAACTGGCTCAAATTCTCTCAACCTTAGCCGTCCCTTCAGCAGGAACCGGAACCATGTGAAGCCTCAGACGAGGACTAATGATGGACTGTCTTCCACTGTGTCACCGGTGGCTCTGGTGGATGGACTGTCTGGCCTGCACAGTCCCCAGCCTCCCTCCAGTGCTGGACCCGTGCTGTCATCCGCTGACCTCAACTCCTCTTTTCCACATCTAGCTTCCAATGAGCCAACCGATGACGGCACCATGGCAGGACGAGGAAGGAGAACGACATACCGAGGCACTCGAAGGCGGCGAGATGATGACCGCACAACAAGACCAATCCCTCTCTCTCAAGTGAAGGTACCGCCCCCTAAGTTTGACCTAGCCGCCTCCAACTTCCCTCCGCTGCCAGGCTGCTCTGCCAGTCCGCAGGGGGAGCCTGTGCTGGAGAACCGCCTCTCTGATGTTGTACGGGGCCTGAACAGGGAAAAG

Function

symbol description
larp4aa Predicted to enable RNA binding activity. Orthologous to human LARP4 (La ribonucleoprotein 4).

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-50 Predicted to enable RNA binding activity. Orthologous to human LARP4 (La ribonucleoprotein 4).

Ensembl:

ensembl_id ENSDARG00000078401

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044206 False 2782 mRNA 0.55 17 27511709 27547931
TCONS_00044207 True 618 mRNA 0.57 5 27516115 27521895

Neighbor

gene id symbol gene type direction distance location
XLOC_022404 asb8 coding downstream 5548 27495091 ~ 27506161 (-)
XLOC_022403 atf7a coding downstream 32151 27446929 ~ 27479558 (-)
XLOC_022402 dip2ba coding downstream 69165 27358722 ~ 27442544 (-)
XLOC_022401 scn8aa coding downstream 166284 27251626 ~ 27345425 (-)
XLOC_022399 si:dkey-157g16.6 coding downstream 266474 27134942 ~ 27245235 (-)
XLOC_022406 pfkma coding upstream 5855 27553786 ~ 27571667 (-)
XLOC_022407 si:ch211-156j22.4 coding upstream 27608 27575539 ~ 27589829 (-)
XLOC_022408 CR354381.1 coding upstream 32233 27580164 ~ 27580292 (-)
XLOC_022409 phf8 coding upstream 43435 27591366 ~ 27608257 (-)
XLOC_022410 arf3a coding upstream 74089 27622020 ~ 27633730 (-)
XLOC_022400 NA non-coding downstream 312614 27191956 ~ 27199095 (-)
XLOC_022396 NA non-coding downstream 496549 26961010 ~ 27015160 (-)
XLOC_022393 NA non-coding downstream 752149 26749407 ~ 26759560 (-)
XLOC_022392 CR855310.1 non-coding downstream 835939 26675652 ~ 26675770 (-)
XLOC_022380 BX005414.1 non-coding downstream 1718616 25789132 ~ 25793093 (-)
XLOC_022412 NA non-coding upstream 104965 27652896 ~ 27675394 (-)
XLOC_022415 NA non-coding upstream 179364 27727295 ~ 27729454 (-)
XLOC_022416 NA non-coding upstream 222550 27770481 ~ 27772372 (-)
XLOC_022417 NA non-coding upstream 240438 27788369 ~ 27795923 (-)

Expression


Co-expression Network