XLOC_022399 (si:dkey-157g16.6)


Basic Information

Item Value
gene id XLOC_022399
gene name si:dkey-157g16.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27134942 ~ 27245235 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044195
GTTCAGAGATGCTTGTAAGGGAAGGAAGCACATTACCCATCTCTTCTGCTGGCATCCTGCTCGCTCACCTTCCCTATCTTTTCTAACAGAGAAACTGTGGGACCTGGGGGGAAAACCAAACGAGCacggagaacatttaaactctgcacaaaaatgccaactggcctggtAAAGACTTGAACCAGTATGTTcttgcaacagtgctaaccactgggccgccgtacTGCCCCATCTTCGGGCACTTAATGACCTCCATCAGATTCAACCCTGCTTCCAGCTTCACATGGGGATCCAGAAAATCTCAAACAGTTTCTGCACACCTCTTCTACTCAGaaacaCGTTTTTTAGAGTCCTAATGCGAGTCCAGGCCAGCGATGGACTACAGCCGTACAGACGCTAACCTGGGTTTCCCCACAGAACTGTTACCATAATCAAGACCAGGTCCGCAGAATGCTGAGTCCCATTGTTCCCTATAGCCTATTAAAGATGCACTGGAACCCGGAGCATGCCCAGCCCTTGAGCCAGTGGCCTGAGCAGCATTTGGATGTGTCCTCCACCACCTCATCCCCTGCACACAAGTCTGAGCTCTACTCTAGTCGTGGTCGTGGCTCCTACAGCTACGCATGGGCAAATGATGACATCTCAGCCCTTACCGCCTCTAACCTGCTGAAGCGATATGCTGAGAAATACTCAGGAATGCTAGACTCACCTTACGAACGCCCTAGTGTGGGTGCATACCCTGAGCCTGGAGCCTTCGGAGGCCTCAACGGAGGCCAGAAAAGTGAACTGGAACCATGGCCTCTTACGCACAGCACTGATGGGGCATATTCCTTGGTGCCTCCTTCCTCTCATGAAAGTCTATCAGGGCCAAAAGTGGTTCCCACATCAGCAGGCCCACCAGGCTCGGGCAATGTATCAGCAGTTAACAGCAACCTTTCAGACTCGGGCTACAGTGGTAGCAGCTCCTGCAGTGGGCCCCATTCCAGTGAATACCCCCCCAGTTACAATGGCACCTATCTCTCTTCAGGGTACTGTCCCCAACCCAGTTCAGCACTTCCACCAGCCTCGTTACATGCCCTTCAACCGAACCCTACACTTCTTCCCAGTTACACAACTACTGCCCCTGTGTACAACTACCCACCTAGCACCTACCCCCACCAGACTGGCCTTGCTCCTAGCTACACCCACCCAACAGCCCCCTACATCCCCTCTCCACTTCCCTCAAGACCCACAGTGGTTGGTGGCAGCTATGGCTATCAGAACAGCAGTGTAGGAGGCTCAGAGCCTGGGGGCTCCCTGAAGAGAAAAGCATTTGAGATGACTCTGGATGAGGAAGACAGTGACAGTTCACGCTATAGGAAATATAGCTATGACCCCATGAAAACTGGGGGAGATTCTCCATATGGGGTCACTGATAAAGCTGGAAATGGCTTTGGAACAGGTAGCACTGATCCTCAAGGCTTTAAACCTAGTAAACCTTCATCTCAGTCAAGCCTGGAAGGAGATGAGGTGGGAAAGTACAGTGGGCTAAAGCCCCTGGTTTCACCAACATACGGAGCCGCAGGGGACTACAGCCCCCCAGCAGCTATGACAGGAGAGAATGGAGGTGCGGAGCAGGGTTTCTCACAGAATCGTTCTCAGAAGCGCTCTGATCCCATGAAAAGCATAGAGCCCAGAATGCTGGAGCTAGTTAGCCGGGAACTGCAGGACTGCAGTCCAGCTATGCTTTGGACTGAACTGGCTGGGAACTGTCACATTAAAGCAGCATTAGAAGAGGACCTGCTGTGGCCTGTCCTGCGACCCAACCCTGCAATCCACCCACCAAAAACCATCCTGCTATTTGGCCCTCAAGGAGGGGGCAAAACCACACTAGCACGATCCTTGTCATCTCAAATAGGTGCCTCCTTCTATAGGCTGAGTTGTGCAACATTGGCCTCTAAATTGAAGGGAGAAGCAGAGCAGCTCTTGCTCACCCTGTTCTCAGTTGCAACTGCCAGACAACCCGCAATGGTGTTGCTTAGTGAGGTGGAAGCCATTGAGGAGGAAGGTCTCAGACAGCAACTGCAAGCTCAGCTGGAGAAGATACAACATAATCAGAGCAACCAGTTTCTGGTGGTGTGCACCACAAGACGGCCTGATTTGATCAAAGATTCCCTTCTGCGCTGTTTTTCCAAGCGTTATCACATAGGCCTGCCAGATGGGAACACACGCAGACACGTGCTTCTGCAGGCGCTGGCGCCCCAGGGCTGCAGTCTCAGCGAAAGGGAGTTGTCAGCAGTACTGCAGCGTTCAGAAGGCTTCTCTGTCTGGGAGCTGCTGCAGCTTTGCCAGCAGGCTCTGGCATCAGCTTCGGCCTCTGCATCAGTGCCCTTGCACAGCCTCCCTGCATCCCTTTCTTCCCCTACTCTCCAAGACTTTGAAAATGCTTTCTGTAAGGTACGCCCTCACAGCACCCCAAAAGAACTGGACACTTGTATGGAGTGGAGCAAGGTTTACAGCCACTGA
>TCONS_00044196
GCACACACGAGCCTGTCTGCTCCGAGGATTATCTATCTGCTTTTGAATCTGATGTGGAAATGCAGGCATGAGTAGaaacaCGTTTTTTAGAGTCCTAATGCGAGTCCAGGCCAGCGATGGACTACAGCCGTACAGACGCTAACCTGGGTTTCCCCACAGAACTGTTACCATAATCAAGACCAGGTCCGCAGAATGCTGAGTCCCATTGTTCCCTATAGCCTATTAAAGATGCACTGGAACCCGGAGCATGCCCAGCCCTTGAGCCAGTGGCCTGAGCAGCATTTGGATGTGTCCTCCACCACCTCATCCCCTGCACACAAGTCTGAGCTCTACTCTAGTCGTGGTCGTGGCTCCTACAGCTACGCATGGGCAAATGATGACATCTCAGCCCTTACCGCCTCTAACCTGCTGAAGCGATATGCTGAGAAATACTCAGGAATGCTAGACTCACCTTACGAACGCCCTAGTGTGGGTGCATACCCTGAGCCTGGAGCCTTCGGAGGCCTCAACGGAGGCCAGAAAAGTGAACTGGAACCATGGCCTCTTACGCACAGCACTGATGGGGCATATTCCTTGG
>TCONS_00044197
TTCAGAGCTGAAATCCTGTTAACCCGTGACCCATTACTTGACCCACTGAAGTGTTGGAGGAGACTAAAATCAAGAGTGAAACAATAAAACTCTGAGAGTCACAGTCTCATGCTTAAGTGGGTTTGAGAAAGAGTGATTGTGAATCTGATGTCTTGTTCAGAGATGCTTGTAAGGGAAGGAAGCACATTACCCATCTCTTCTGCTGGCATCCTGCTCGCTCACCTTCCCTATCTTTTCTAACAGATGCTACTGTGTCctgctgactgacagctgatggGATGCTTTTGGAGAGTCGCCACATGGAAACTGTGGGACCTGGGGGGAAAACCAAACGAGCacggagaacatttaaactctgcacaaaaatgccaactggcctggtAAAGACTTGAACCAGTATGTTcttgcaacagtgctaaccactgggccgccgtacTGCCCCATCTTCGCAGGACTAATCTTTTACAGCACTGCCACAATGAATCCCTTTGGTAACAGGATTGCCGGAGAGTGAGAAGGACTGTTCATCTGCTTTGGCC
>TCONS_00045021
CGGTGGAtacccaataaaataaaataaaagaaataaagaatatAAAGCAAAGCATGCACAATGTGAACCACATTCGAGCTAATATTTAAACCTTTTCCTCGCTTTTCCTCCATTTTGGAGCTGAGCAATATTCTGTCCCTGCTCCCCTTTCTGCAAGTCACATGGTTTGCTCTCCTGATTTCGCTCTTCTATCGCCAAATCTTACGACGCGTGACATCCCACCCCAACCCATCCGTGAACGAGCCACGCGTGATTCGGACCTGGTCTTTATCTTAAGATGTCTGTCTGAGTCTCGCCGCCCCCCGGTCCAGCGTGTGCGAGGCGAGGTGGAGACTGAAACTGAGCGGGGAAGACGGAGAGGAGAGAGAGGGTGCGGCGGAGCACTGCAGTGCAGATAAATGAATGCACCATTGGTGGCTGAGTCAGCAGCCCACTCCCAGTTTGGCCCACTGCCTGCACCAACTGTGTATGTGGAGGAACAACATGTATGCATACTACAAACAAACACGCTCGCGCGGGCGGTCGATATGTCTCCTGCCTGATCGTTTTGCAGTTAGAGTTGCACTGGCCAAATCATTACGTTTCTGTTTTCCGTGAGCTTGCGAGCTCGACATAATTCTTTTCAGGTTCATGCACTGAAGTCTGGTTTTTGCATCCAGCTGCTGTGATTTATGCTCTGGTGCTTTCAGACTCCACCTAAAGAAAGTCAACTCCAGTGAATCAATGAAGAGAGGTTTCACTGTCAAGTCACCCCGATCTTCACCAATCCTCGCGCTCCACCGCCTGAGCAGCACCAAAACTGCACTGGAACTGCAAGCagaatggatgttttttttttttttgggagggaTGTGCTTGACGACAGAGCTGCTGGATGATGATGTGGGTACTGAGTCAAGGTCTGGAGTTACTTCACATTCAGTGTGTTcttgaaatgtttaaataacCACATATTATGTCTCACGCTGTAGCGCAGGGGTGTCAAAGTCAATTtttggagggctgcagccctgcagagtttagttccagccctgcttcaacactcctatctgtaggtttcaaacaagcctgaagcactcaattagtttgatcaggtgtgtttaattagggttggaactaagctgCGGAGCTGCGcctctccaggaactgagtttggcGCCTGCGCTGCACCTGCAGTTGACAACTGAGAATTTGTGTGCTCAAAAAATGATAATGCCATGACAACAAAATTTATTATGGTACTTTAACTTTTTAATCAGGTTTCAAAAAACTGTTTAGTTGTACAAAGTATaagttaatattttagtcatattATGTAGGTtgaaatataaaaagttaaaaaaagaaaaaaaatgaaggtaGCAAGAATTTAattttacagtgtttgtttttgtattgcgCGTACACCCTGTAGATTCAACAAAGTAGTAAAAAAGACAGGCTCTGCATTACAGCAGACAAAGACATTGCTTTCATGTTTTCACTTTAACCATGGATTTATTATAGTAAAAGTGGAGTaaccatgcattttttttattgattagcTACCATTTGTATGACTGCTGTTTTAAAACATAGTTAAACTACAGTTAATGTAGCAGAAACAGAGTATTTGTGGTAATaccattgtttagttttttttctttcatgactgaatttgttaacacacacacacacacacacacaaatataaattacatatatcattagaaaaaaaaatgtaaaatgttaaagttttaaattataaacGTAGCCCTCttgtcatttattaaacaaataacaaactggccagcacattcaactgtcctcaaaTTCTGGAACTTTGTCAGTAAGAAGTGGGTCTTCCGAACCTCCCTCCCCCTGGCTACAGATTTGGACTGCATAAGAAGACCCTGCACACCATTCAGAGCTGAAATCCTGTTAACCCGTGACCCATTACTTGACCCACTGAAGTGTTGGAGGAGACTAAAATCAAGAGTGAAACAATAAAACTCTGAGAGTCACAGTCTCATGCTTAAGTGGGTTTGAGAAAGAGTGATTGTGAATCTGATGTCTTGTTCAGAGATGCTTGTAAGGGAAGGAAGCACATTACCCATCTCTTCTGCTGGCATCCTGCTCGCTCACCTTCCCTATCTTTTCTAACAGAcgcaTCAGTCCAGCATCTTCACCTC

Function

GO:

id name namespace
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0010569 regulation of double-strand break repair via homologous recombination biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0008568 microtubule-severing ATPase activity molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-189 Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to be active in nucleus. Orthologous to human FIGNL2 (fidgetin like 2).

Ensembl:

ensembl_id ENSDARG00000057062

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044195 False 2505 mRNA 0.53 5 27134942 27235403
TCONS_00044196 False 577 mRNA 0.53 3 27136612 27152866
TCONS_00044197 False 539 processed_transcript 0.47 5 27206719 27235654
TCONS_00045021 True 2171 lncRNA 0.42 5 27233879 27245235

Neighbor

gene id symbol gene type direction distance location
XLOC_022398 stat6 coding downstream 11762 27078866 ~ 27123180 (-)
XLOC_022397 zgc:66440 coding downstream 73870 27041111 ~ 27061072 (-)
XLOC_022396 NA coding downstream 119782 26961010 ~ 27015160 (-)
XLOC_022395 adcy6b coding downstream 246725 26797035 ~ 26888217 (-)
XLOC_022394 galnt6 coding downstream 350171 26763338 ~ 26784771 (-)
XLOC_022401 scn8aa coding upstream 6391 27251626 ~ 27345425 (-)
XLOC_022402 dip2ba coding upstream 113487 27358722 ~ 27442544 (-)
XLOC_022403 atf7a coding upstream 201694 27446929 ~ 27479558 (-)
XLOC_022404 asb8 coding upstream 249856 27495091 ~ 27506161 (-)
XLOC_022405 larp4aa coding upstream 266474 27511709 ~ 27547931 (-)
XLOC_022393 NA non-coding downstream 375382 26749407 ~ 26759560 (-)
XLOC_022392 CR855310.1 non-coding downstream 459172 26675652 ~ 26675770 (-)
XLOC_022380 BX005414.1 non-coding downstream 1341849 25789132 ~ 25793093 (-)
XLOC_022379 NA non-coding downstream 1348858 25783695 ~ 25786084 (-)
XLOC_022408 CR354381.1 non-coding upstream 334929 27580164 ~ 27580292 (-)
XLOC_022412 NA non-coding upstream 407661 27652896 ~ 27675394 (-)
XLOC_022415 NA non-coding upstream 482060 27727295 ~ 27729454 (-)
XLOC_022416 NA non-coding upstream 525246 27770481 ~ 27772372 (-)
XLOC_022417 NA non-coding upstream 543134 27788369 ~ 27795923 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G18902 NA non-coding CI01000001 null 10252108 ~ 10252654 (+)