XLOC_022380 (BX005414.1)


Basic Information

Item Value
gene id XLOC_022380
gene name BX005414.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 25789132 ~ 25793093 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044148
GTTTAGCATCATAGGTTCACTATACACAGTCTCTTGTACAGTACAGCTCTTAACAGACTCCCAAAAATTTTGTGAAGAGTTACATTCAGAATTGTGACCATGACTGTGGGAAAGaaGGGGGGCGGCCTAGTTATGGTGTAGTTGATCCACCTGGAGATGGTGAGACGCCTTCAGAAACCAGCTCTGATAACCAAAACATCAGGAAGATGTACATTTCCTTGATGATCCAGCTTTCTGTCACAGTTTCCTTCATGGTTATTTGCATTTActg
>TCONS_00045018
GTCCAAGCCTCAGTCAATGGCGTTTTAAAACCTGCATGTTGCTAGAATGCCTTTCAGAGTGAGGGAGGGGCTCTGAGCTTTATTTCCGCAGTACAGCATCATCACCATCTATGTTTAGCATCATAGGTTCACTATACACAGTCTCTTGTACAGTACAGCTCTTAACAGACTCCCAAAAATTTTGTGAAGAGTTACATTCAGAATTGTGACCATGACTGTGGGAAAGGTTTCAGTAACAAACAAATTCAACATTGGCTCAGAAGTTCAGCCAATGGCTTCAGCTCCACCAAATAATGAGGAGGAAACTGCTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094688

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044148 False 271 processed_transcript 0.42 3 25789132 25792981
TCONS_00045018 True 311 lncRNA 0.43 2 25789926 25793093

Neighbor

gene id symbol gene type direction distance location
XLOC_022379 NA coding downstream 3048 25783695 ~ 25786084 (-)
XLOC_022378 si:dkey-21c19.3 coding downstream 9137 25770401 ~ 25779995 (-)
XLOC_022377 lrp1ab coding downstream 102178 25452656 ~ 25686954 (-)
XLOC_022376 NA coding downstream 485113 25302730 ~ 25304019 (-)
XLOC_022375 idh3g coding downstream 654027 25121998 ~ 25135105 (-)
XLOC_022381 fitm2 coding upstream 3255 25796348 ~ 25798099 (-)
XLOC_022382 CR318614.1 coding upstream 58820 25851913 ~ 25891426 (-)
XLOC_022383 ada coding upstream 153355 25946448 ~ 25976656 (-)
XLOC_022384 gdi1 coding upstream 270056 26063149 ~ 26077038 (-)
XLOC_022385 rca2.1 coding upstream 301388 26094481 ~ 26120281 (-)
XLOC_022373 NA non-coding downstream 694804 25093873 ~ 25094328 (-)
XLOC_022370 CR376748.1 non-coding downstream 862784 24880227 ~ 24926348 (-)
XLOC_022369 CU041397.1 non-coding downstream 939528 24849487 ~ 24849604 (-)
XLOC_022392 CR855310.1 non-coding upstream 882559 26675652 ~ 26675770 (-)
XLOC_022393 NA non-coding upstream 956314 26749407 ~ 26759560 (-)
XLOC_022396 NA non-coding upstream 1167917 26961010 ~ 27015160 (-)
XLOC_022400 NA non-coding upstream 1398863 27191956 ~ 27199095 (-)
XLOC_022408 CR354381.1 non-coding upstream 1787071 27580164 ~ 27580292 (-)

Expression


Co-expression Network