XLOC_022385 (rca2.1)


Basic Information

Item Value
gene id XLOC_022385
gene name rca2.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 26094481 ~ 26120281 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044154
CTCCTTGGAAAAAAATACTAACCCGACATGATCTCCGTACGCTTTAATCTGTTCCGGAAAGTTAAACTGACCTAATCTGACACGGAAGAGTGAGAAATATAGCCTGAACACCTAAAGAAATCAAAAACGTATTTAGTGCTGCCATTCATCGAAATAAGATGCCAAGAAATGTGCTTTCTCTCGCTGTTGCTTTGTTCTCCTGTCTTTTGATGTGTACACATGTTCAAGGAGAGTGTACACTGCCTTCTTTTGAATCAAGGAATGTCGTCTTATCAGGATCTTACAGTCCAGGTCAAACTTTGCCAGATGGATCTGCTTTAACATTTGAGTGCTTGTCTGGGCACACACCAGTTGATTCAAGAGCAACTAAATCAATTACTTGTACAAAAAGCCAGTGGACAGATCTAGGGCTCAGTTGCAAAAAAAAATCCTGTGGAAGTCCTCCAGAAATTGTAAATGGGAGATATGAAATATCTGGAATTTTGTTTGGGGACACAATTAAACCCATTTGTAACACAGGATACATGTTAGTTGGGTATGGGTTAGATCAAAGAGTGTGCCGCGATGGAGGATGGGATGGCAGAGATCCTGAATGTGAAGtggtgAAATGTGCGGCACCACCATCCATAGAAAATGGACAACTTTCAGATGAGCCTTTGGAAAGTTATGAATATTCACAAGTTGTAACCTACAGATGTAATTCTGGGTTTAGTCTTAGTGGAAGTTCAAACCTTCATTGTTCTGATGATGGGACCTTTAAACCAGATCCACCCAAATGTTTGGATGGGTGTCCAAAGCCTGAAATTCCACATGCAATTAGAATTGGTGGAAGATCTCCTCCATACAAAATAGGACACTTTATAGAGTACAAATGTGAAGATCTCTATACACTGAAAGGAATAAAGGAAATCGCCTGTAGAGCAGGAGGATGGGATCCTGAACCACCAAAGTGCATTGAGCCTTGTAGAGTGCCTAATTTTGGaggaaatgtcactttaagagaGGAGTTCAGCTCCAAAGACCTTTTTCCTCATGGAGACAAAGTAGCATTTAAGTGCAAGAGTGGATATGAGCCAGTTGATTCAACAGTATCTAGGATAGCTACTTGTGAGGAAACCAAATGGACAAAACTGCTCCTGACCTGCAAAGaagaaaaaTCATCATCGTCTTCCGCACCTCTAGGAGCGATTTTAGGTGGAATTTTCGGTAGTGGTGGTTTACTTTTACTTGGATGTTTTGGAGTTTATATGCTCGTTACGAAACAGTAAAGTTGCTGCCATgggagaaaaaacaaaaacaaatgaagcCTATATGTTATACAAGCACTTTCAACAATCCTGCAAGAGACCGACTGATTTCACGCCGCAAATTCCTCCATCTTAAAGAGCTTCATTTGTACATCATACTAATGTCTGATAGTTACTAAGTTTGCCCAATTCTGCATTCGCTTGAAGAAATATGGCTTCAGATTAGTCAGGTTGATTTCACTTTTATAAAGTGTTTGCTTCTCTTTTCTAacttttaacttaatttgatGTTAAACACTGAGCTTGCAGTGATCACTTATTAAGACAGTCCATTCTTCATACCGAGAACAGCTGAAGATGCACTGATATGATTTCGTTGAGGGTTGTAGTTAACGTAAATATGTTAAAAAGCCTGATTAAATTGTGGATTAAAAAAaggatgttttatattttgttgtgttAGTCTCAATTACAGGCTTCCAGACTAATGAAGAATTGAGTTTTCTGCATTAATTAGGTTtatctgtgtgtttatttataattacagaATTGTCCAAAGTACTCAAGGCCCAAAATAGTTTTTCACTTTAATATAATAATGGGCACTGGAAAAGGGTTAGTGTTTTATATTGctgctgaaaaataaaattagGTTTCAGATGCATTATTCATATCGTAGCGATATCAAATTCAGTTAGGTCACTCGTGTAATTATGGTTCTTccaatttgtaatttgttttactTGTAATTATTGTGCTGTTATTGGTTTCTGGGTATTATAATGGTTGCAAATCATCTCAAATTTAGTTCATCATAAACTGATACTGCATTTTCACTACTCTTTCATATTGCAAATGCTGGAATACTGTCAATCAACTCTGATTCTATTTTTGCAAATTGTGAATGTTCTTTGAGCTGTCTTTGGGTGCCTGATGGTCAAATTAAAAGCTCTAAAATCAACCCACAAGACTTTA
>TCONS_00044153
CTCCTTGGAAAAAAATACTAACCCGACATGATCTCCGTACGCTTTAATCTGTTCCGGAAAGTTAAACTGACCTAATCTGACACGGAAGAGTGAGAAATATAGCCTGAACACCTAAAGAAATCAAAAACGTATTTAGTGCTGCCATTCATCGAAATAAGATGCCAAGAAATGTGCTTTCTCTCGCTGTTGCTTTGTTCTCCTGTCTTTTGATGTGTACACATGTTCAAGGAGAGTGTACACTGCCTTCTTTTGAATCAAGGAATGTCGTCTTATCAGGATCTTACAGTCCAGGTCAAACTTTGCCAGATGGATCTGCTTTAACATTTGAGTGCTTGTCTGGGCACACACCAGTTGATTCAAGAGCAACTAAATCAATTACTTGTACAAAAAGCCAGTGGACAGATCTAGGGCTCAGTTGCAAAAAAAAATCCTGTGGAAGTCCTCCAGAAATTGTAAATGGGAGATATGAAATATCTGGAATTTTGTTTGGGGACACAATTAAACCCATTTGTAACACAGGATACATGTTAGTTGGGTATGGGTTAGATCAAAGAGTGTGCCGCGATGGAGGATGGGATGGCAGAGATCCTGAATGTGAAGtggtgAAATGTGCGGCACCACCATCCATAGAAAATGGACAACTTTCAGATGAGCCTTTGGAAAGTTATGAATATTCACAAGTTGTAACCTACAGATGTAATTCTGGGTTTAGTCTTAGTGGAAGTTCAAACCTTCATTGTTCTGATGATGGGACCTTTAAACCAGATCCACCCAAATGTTTGGATGGGTGTCCAAAGCCTGAAATTCCACATGCAATTAGAATTGGTGGAAGATCTCCTCCATACAAAATAGGACACTTTATAGAGTACAAATGTGAAGATCTCTATACACTGAAAGGAATAAAGGAAATCGCCTGTAGAGCAGGAGGATGGGATCCTGAACCACCAAAGTGCATTGAGCCTTGTAGAGTGCCTAATTTTGGaggaaatgtcactttaagagaGGAGTTCAGCTCCAAAGACCTTTTTCCTCATGGAGACAAAGTAGCATTTAAGTGCAAGAGTGGATATGAGCCAGTTGATTCAACAGTATCTAGGATAGCTACTTGTGAGGAAACCAAATGGACAAAACTGCTCCTGACCTGCAAAGaagaaaaaTCATCATCGTCTTCCGCACCTCTAGGAGCGATTTTAGGTGGAATTTTCGGTAGTGGTGGTTTACTTTTACTTGGATGTTTTGGAGTTTATATGCTCGTTACGAAACAGTCAAAACGTAAACAAAAGGTGCCTACAAATGAAGAGGGATCGCTTTAATACCCTCACATTCGTGGTAAAGTTGCTGCCATgggagaaaaaacaaaaacaaatgaagcCTATATGTTATACAAGCACTTTCAACAATCCTGCAAGAGACCGACTGATTTCACGCCGCAAATTCCTCCATCTTAAAGAGCTTCATTTGTACATCATACTAATGTCTGATAGTTACTAAGTTTGCCCAATTCTGCATTCGCTTGAAGAAATATGGCTTCAGATTAGTCAGGTTGATTTCACTTTTATAAAGTGTTTGCTTCTCTTTTCTAacttttaacttaatttgatGTTAAACACTGAGCTTGCAGTGATCACTTATTAAGACAGTCCATTCTTCATACCGAGAACAGCTGAAGATGCACTGATATGATTTCGTTGAGGGTTGTAGTTAACGTAAATATGTTAAAAAGCCTGATTAAATTGTGGATTAAAAAAaggatgttttatattttgttgtgttAGTCTCAATTACAGGCTTCCAGACTAATGAAGAATTGAGTTTTCTGCATTAATTAGGTTtatctgtgtgtttatttataattacagaATTGTCCAAAGTACTCAAGGCCCAAAATAGTTTTTCACTTTAATATAATAATGGGCACTGGAAAAGGGTTAGTGTTTTATATTGctgctgaaaaataaaattagGTTTCAGATGCATTATTCATATCGTAGCGATATCAAATTCAGTTAGGTCACTCGTGTAATTATGGTTCTTccaatttgtaatttgttttactTGTAATTATTGTGCTGTTATTGGTTTCTGGGTATTATAATGGTTGCAAATCATCTCAAATTTAGTTCATCATAAACTGATACTGCATTTTCACTACTCTTTCATATTGCAAATGCTGGAATACTGTCAATCAACTCTGATTCTATTTTTGCAAATTGTGAATGTTCTTTGAGCTGTCTTTGGGTGCCTGATGGTCAAATTAAAAGCTCTAAAATCAACCCACAAGACTTTA
>TCONS_00044155
TTCAGATACATGTTAGTTGGGTATGGGTTAGATCAAAGAGTGTGCCGCGATGGAGGATGGGATGGCAGAGATCCTGAATGTGAAGtggtgAAATGTGCGGCACCACCATCCATAGAAAATGGACAACTTTCAGATGAGCCTTTGGAAAGTTATGAATATTCACAAGTTGTAACCTACAGATGTAATTCTGGGTTTAGTCTTAGTGGAAGTTCAAACCTTCATTGTTCTGATGATGGGACCTTTAAACCAGATCCACCCAAATGTTTGGATGGGTGTCCAAAGCCTGAAATTCCACATGCAATTAGAATTGGTGGAAGATCTCCTCCATACAAAATAGGACACTTTATAGAGTACAAATGTGAAGATCTCTATACACTGAAAGGAATAAAGGAAATCGCCTGTAGAGCAGGAGGATGGGATCCTGAACCACCAAAGTGCATTGAGCCTTGTAGAGTGCCTAATTTTGGaggaaatgtcactttaagagaGGAGTTCAGCTCCAAAGACCTTTTTCCTCATGGAGACAAAGTAGCATTTAAGTGCAAGAGTGGATATGAGCCAGTTGATTCAACAGTATCTAGGATAGCTACTTGTGAGGAAACCAAATGGACAAAACTGCTCCTGACCTGCAAAGaagaaaaaTCATCATCGTCTTCCGCACCTCTAGGAGCGATTTTAGGTGGAATTTTCGGTAGTGGTGGTTTACTTTTACTTGGATGTTTTGGAGTTTATATGCTCGTTACGAAACAGTCAAAACGTAAACAAAAGGTGCCTACAAATGAAGAGGGATCGCTTTAA

Function

symbol description
rca2.1 Predicted to be involved in epidermis development and lymph vessel morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-60 Predicted to be involved in epidermis development and lymph vessel morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000056075

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044154 False 2222 mRNA 0.37 12 26094481 26120281
TCONS_00044153 False 2287 mRNA 0.38 13 26094481 26120281
TCONS_00044155 True 798 mRNA 0.41 8 26099896 26111760

Neighbor

gene id symbol gene type direction distance location
XLOC_022384 gdi1 coding downstream 17443 26063149 ~ 26077038 (-)
XLOC_022383 ada coding downstream 117825 25946448 ~ 25976656 (-)
XLOC_022382 CR318614.1 coding downstream 203055 25851913 ~ 25891426 (-)
XLOC_022381 fitm2 coding downstream 296382 25796348 ~ 25798099 (-)
XLOC_022380 BX005414.1 coding downstream 301388 25789132 ~ 25793093 (-)
XLOC_022386 rca2.2 coding upstream 5395 26125676 ~ 26128664 (-)
XLOC_022387 RSBN1 coding upstream 63491 26183772 ~ 26228077 (-)
XLOC_022388 MAGI3 coding upstream 111904 26232185 ~ 26488622 (-)
XLOC_022389 si:dkey-205h13.1 coding upstream 383595 26503876 ~ 26523026 (-)
XLOC_022390 si:dkey-205h13.2 coding upstream 403717 26523998 ~ 26536055 (-)
XLOC_022379 NA non-coding downstream 308397 25783695 ~ 25786084 (-)
XLOC_022376 NA non-coding downstream 790462 25302730 ~ 25304019 (-)
XLOC_022373 NA non-coding downstream 1000153 25093873 ~ 25094328 (-)
XLOC_022370 CR376748.1 non-coding downstream 1168133 24880227 ~ 24926348 (-)
XLOC_022392 CR855310.1 non-coding upstream 555371 26675652 ~ 26675770 (-)
XLOC_022393 NA non-coding upstream 629126 26749407 ~ 26759560 (-)
XLOC_022396 NA non-coding upstream 840729 26961010 ~ 27015160 (-)
XLOC_022400 NA non-coding upstream 1071675 27191956 ~ 27199095 (-)
XLOC_022408 CR354381.1 non-coding upstream 1459883 27580164 ~ 27580292 (-)

Expression


Co-expression Network