RNA id: TCONS_00044118


Basic Information

Item Value
RNA id TCONS_00044118
length 4976
RNA type mRNA
GC content 0.45
exon number 29
gene id XLOC_022360
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24511417 ~ 24542952 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGAAGAGCTATGACGTCACATTCCTAAAACTGACAGCTGATTCAGAAACTGTTAGTTtctgctgttgtgtgtgtataataatgACTCTAGAGGGGAAATTATGAGCTTTAGCATTCACCCTTTAGTTCACAGATGGATGCTAAAGGGAACTGTGTCCCGGGGCTGGATGGGGCATCCTCCTCCCCTGACACTGAACCCCTCATAAAGGATCCAAGACCCCCAGAGCTCAGTCTCGTCTCACATATGGACGTTCAGGGGTACAGATGGGTGTGCTGGAAGGTGTGGTTGTGCCGAATTGGGGCAGTATTTTCTGTCGGCCTGCTGCTCGTGCTCTTCAAATGGCGTCCTCGTATTGGCATACTGGCCCGATGCAAGTCCTGTCCCATTTCAATGGcagatgttttattattaaaggACAGATATGGACAGCAGTTTGTGGTGGATGTGATTACAGAGGAGGTTGAGGAAGGCAGTCTGGACTTTGCAGTAGGAGATGCGGATGAGAATGAATGGAGAGACACTGTGCAGCTACACAGTGAAAAGAAAACACTACTCAGATACTATGTGTTTGAGGGCATACGCTACATATGGATCTCCAAGAAAGGAGCCTTTTGCAAAGCAAGTGTTCTCAGTGAAGGCTGGACCTGCGCTGACCTGCATGGTCAACAGCAAGGACTGAGTCGAGCAGACCAGAGCACAAGgaaACAGATTTTTGGGGCCAATATCATTGACGTACCAGTCAAGTCTTACCTGCAGCTTCTCTTCGAAgagGTGCTCAATCCGTTCTACATATTTCAAGTGTTTAGTATCATCCTGTGGATGTCAGATGGATATGTCTATTATGCAGCTTGCATCTTCATCATATCTTTAATTTCAATTGGAGTGTCCCTTTATGAAACGCGTAAGCAAAGCACCACTCTCCGCCGCATGGCCTGTTTGATAGTGAACGTTACTGTGCGCAGGGACACCGGAGaGGAGGAGTGTGTGAGCTCTGAAGAGCTTGTTCCAGGAGACTGTGTTGTAATTCCAGCTGAGGGTTTGCTCTTGCCCTGTGATGCTGCCCTGGTGGCCGGGGAGTGCATGGTGAACGAAAGCATGCTGACTGGTGAGAGCATACCTGTGATGAAGACGCCATTGTCTAATTCTGAGGCCACATATAATCCGGAGTCTCAGCGCAGACACACTTTGTTTTGTGGCACACAGATTATCCAGGCTAAAGGAGGTGGTCCTGGAAAAGGGGCTATTGCTGTCGTAACATGCACAGGTTTTTTAACTGCCAAAGGAGACCTTATTAGCTCTATTCTCTACCCTCAGCCCTTAGACTTCCGCTTTTACCGAGATGCCATGAAGTTCCTTCTTTTTCTAGGACTTCTGGCTCTGATCGGCACCATTTACAGCCTTGTGATTCTTTCAAAGAGCAAtACACCCTGGAAAGAACTAATCATCCGCTCTCTGGATATTGTGACAATTATAGTCCCACCTGCTCTTCCTGCTGCTATAACTACAGCGACCATCTACGCCCAGAATCGGCTGAAGCGTCAGGGGGTTTTCTGCATTAGCCCGCCTCGCATTAACATCTGTGGCAAGATATCACTTTTCTGCTTTGATAAGACTGGCACTCTGACAGAGGAGGGTTTGGATGTGTGGGGTGTGATGGAAGTGACTGGCGGAGTGTTTGGAGAGCTGGTCCCTGACCCTTTGTTTCTCCCTCCTGGTCTGATGCTGTCTGCTCTCGCCTCCTGCCATTCTGTGGCTTTACTAGGCGGTCAAGCACTTGGAGACCCACTGGAGCTCAAAATGATCGAATCTACTGGATGGGAACTGACTGAGCCGGAGAATGACATGGGACATGATTCTGAATTTGGGGGACACAGAGTGCTTGCAGTGATGAGGCCTCCTGCATCTGAGCTCCTGACAGAAGGAAACTCTGTCAGTCAGCCAGTGGCAATCGTGCGTCGGTTCCCTTTCTCCTCTTCTCTGCAGAGGATGAGTGTGGTGACTGTAGGCCCAGCTGAACCTTCTCCTGTTGCTTTTATTAAAGGAGCCCCAGAGATGGTGGCCAGCTTCTGCCATAAAGAAAGTGTGCCTTCTCATTTTTCACATACTCTCCGGGAGTATGCCAGCCAGGGCTTCAGGGTCCTTGGACTTGCCTACAAGCACCTCGCTAAAGAGACTGATCTGAGCACTGTTGAAAGGGTGGAGGTGGAAAAAGGCATGAACTTCCTGGGTCTATTGGTGATGAAGAACCAAGTGAAGCCAGAAAGTGCTGAAGTCATTCAAACTTTAACTCTGGCACAGTTACGGCCTGTGATGGTTACAGGTGACAATATTCTCACTGCTGTGAACGTAGCACGTGTCTGTGGAATGGTGCCATTACATGAGAAGGTTATTTTCGTTCATGCATCGCCCCCTACTGCTGGTTCACAGGCCTCGCTGCAGTTTCATGAGGGAGAGGGAGCCACAGCCACCATTAATACTCAACAGACCATTGATATTCCAGTGCAGGGTCAGTACCAGAGCGCTGTTGGCTATCATCTGGCTATAAATGGGATGTCCTTTGCAGCACTTTGTGATCATTTCCCTGAATATCTACCCAAGGTTTTGATGAGGGGGACAATTTACGCCCGAATGACCCCTGAACAGAAAACCCAGCTGGTTAAAGCTCTGCAGAAACTCAATTACAGGGTGGGCATGTGTGGCGACGGAGCCAATGACTGTGGAGCTCTGCGGGCTGCAGATGTGGGAGTGTCCTTGTCTGAGGCTGAGGCATCTGTTGCGTCTCCCTTCACATCCAAATCTGACAACATCAGCTGCGTGCCTTTACTCATCAAGGAGGGCAGGTGTTCACTGGTGACGTCATTCAGCCTCTTCAAGTACATGGCCTTATACAGTCTCATCCAGTTTGCCTCTGTACTGATTCTCTACAcgGAGAAAACCAACCTGGGTGACCTGCAGTTTCTGTTCTTTGATTTGGTGTTGGTGACGGTGTTGGCTATCCTGATGGGGCGAGGAGGACCCAGTAATGATCTTCACCCTCAGCGTCCTGCTGCAAGTCTGCTGTCTCTGCCAGTCCTGGCCAGTTTACTGATGCACACCGTACTGCTGATCCTGGCTCAGGTCTCTGGCCTGCTTATTACTATGTCACAAGACTGgtATGTGCCTCTAAATTCCACCAGGACAGGTGCTGCAAACCTGCCCAACATGGAGGACACAAGTGTATTTGCTGTATCTGGCTTTCAGTATATCATCATGTCTGTCGTAATAACTAAAGGATTTCCATACAAAAAGCCGCTTTATCACAATGTATTGTTCGTATGTGCTCTGGTCTTCCTCTTTGCTCTCATGAGTTGGCTAGTGCTTTTCCGTCACACCATCATCCACCGTGTGCTGTCGCTCTATGACATCACTGACATGAGTTACAAACTCCTGCTAGTAGCCATCGCTGCGCTAAACTTCTTCATATGCTTCTTACTCGagTTTTTCATTGACCAAGGTGCCCTGAACTGCCTTCGAAACCTCAGAGGAAAACGCGAGTCCAAAAAGCAGTACAAGCGTCTGAACGTCCAGCTTACAGAAACACCGTCATGGCCGCCGCTGAACCAGCCTTTGTTCCCTTCACAGAGCTCCGTCATCAGCATTAGCTAACCCCGGCCTCCACTTTAGCATTTGGGGCTCTCCTGATACACATTTCCAGGGTCGCCAAAGATCTGATACCACGTCTCAGTGCCGTAGTGAGGTATGAGTACCAGATGCCATACTTGTCTGCCTATTATATATGGCGCAAAACTTCTGATGCAGAAACCAGAGTGAGGTAAAGATCACTTTTGGAGATCGTGtttcttattttaatgaataaaaacttttgagtatttttttttggtGTACTGATTTAATTTAGAAGAGCACTGGAAAGAGATTGCTTGAGGTTTATGCAATTTATATATGCAAGTGATCGCTAGGGCTGCGCGATTcagggaaaatatctaattccaattttaaaaaataaattacattttttttattataaatttttttatttattttttattgcagtttCGATTTGATTTACGATTAAATCTTGTAGTCGAGCTTTAGCTAAATATTCTGttgcttcttactgctaaaatgcagcgTGTGTtagcttaaaaaaacaaactaaaaagatattaacttactcCAACTTCTTTTCGAATTAGTTTTTaaacattcagaaattaaacGCTCATTTTTCTGTAGAGCAAAGGTGGTGAGTTATGGCCTTAGTTATCTCCTGGTGGCTTCGTGTTGTTTTAACAGCCGCAAACAACTCTGatattgtactttgctgttgctagctACTATAATGTGTGTCACTGGCCATAtgtttagttgactttttagcaagacactacTCAGATAGCTGTGGTGCTTTTTtgggtgctggttgttgtatttcctcatgctgtggcaacaattctgcaatAGCTCTATCAAATAACCAGTTTTTGTTTGATTTCTGAGACTTTGAAAGCCAAATATTTCCATGTTACCGACGTGCTGTTTTTCTTGGATTTCACTTGTTCAGGCTTTCctctttgttttattgtgggcgttCCGCATAGTCCAGTCACACAATTCTGATTGGGCTTAACAAAAGTGTGCTCAGCTGCTCACTCAATTGgatagtaagactgtcacacacagacgacAGTTACACATTTACTCTGGATGGAGAAAATTATATagtacatatatatttcatatcgtaGCCTCTTGCAATTAGCTAATTGCAACGTTTTAAATTGCAATTGtgattcgattttgattaatcgcccTAGTGATCGGTTCAtacctaaaaaaaatgtaaagtcttgaGAAGTAAACAAAAGAGTTTAAAATGCTGAACACTTTgtttaacatattaaaaaaaattgttgagtACAtgctatttaaagggatagttcaacccctcaaaaataaaaattctgtcggcaa

Function

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0021588 cerebellum formation biological_process
GO:0007626 locomotory behavior biological_process
GO:0006812 cation transport biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-126 Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and metal ion binding activity. Acts upstream of or within cerebellum formation; chordate embryonic development; and locomotory behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; gonad; integument; and muscle. Used to study Parkinson's disease and amyotrophic lateral sclerosis. Human ortholog(s) of this gene implicated in Kufor-Rakeb syndrome; Parkinson's disease; and hereditary spastic paraplegia. Orthologous to human ATP13A2 (ATPase cation transporting 13A2).

Ensembl:

ensembl_id ENSDART00000088777

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045011 lncRNA downstream 2595 24507854 ~ 24508822 (-) True XLOC_022359
TCONS_00045010 lncRNA downstream 11289 24496153 ~ 24500128 (-) True XLOC_022358
TCONS_00044116 lncRNA downstream 18130 24492185 ~ 24493287 (-) False XLOC_022357
TCONS_00044103 lncRNA downstream 299560 24210651 ~ 24211857 (-) True XLOC_022349
TCONS_00044100 lncRNA downstream 324241 24184521 ~ 24187176 (-) True XLOC_022348
TCONS_00044123 lncRNA upstream 65506 24608458 ~ 24611654 (-) True XLOC_022363
TCONS_00045012 lncRNA upstream 118354 24661306 ~ 24666612 (-) True XLOC_022364
TCONS_00044125 lncRNA upstream 129216 24672168 ~ 24682006 (-) False XLOC_022365
TCONS_00044127 lncRNA upstream 133185 24676137 ~ 24677634 (-) True XLOC_022365
TCONS_00045013 lncRNA upstream 550921 25093873 ~ 25094328 (-) True XLOC_022373
TCONS_00044115 mRNA downstream 17606 24489077 ~ 24493811 (-) False XLOC_022357
TCONS_00044117 mRNA downstream 17649 24492585 ~ 24493768 (-) True XLOC_022357
TCONS_00044114 mRNA downstream 22721 24485657 ~ 24488696 (-) True XLOC_022356
TCONS_00044111 mRNA downstream 27977 24440040 ~ 24483440 (-) False XLOC_022355
TCONS_00044113 mRNA downstream 28106 24480302 ~ 24483311 (-) True XLOC_022355
TCONS_00044120 mRNA upstream 2287 24545239 ~ 24547564 (-) True XLOC_022361
TCONS_00044121 mRNA upstream 28860 24571812 ~ 24582606 (-) False XLOC_022362
TCONS_00044124 mRNA upstream 126083 24669035 ~ 24682244 (-) False XLOC_022365
TCONS_00044128 mRNA upstream 150581 24693533 ~ 24699400 (-) True XLOC_022367
TCONS_00044129 mRNA upstream 259947 24802899 ~ 24825863 (-) False XLOC_022368
TCONS_00044112 other downstream 67163 24443182 ~ 24444254 (-) False XLOC_022355
TCONS_00044095 other downstream 344100 24148338 ~ 24167317 (-) False XLOC_022346
TCONS_00044084 other downstream 1647846 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044083 other downstream 1860839 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044082 other downstream 1863735 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044122 other upstream 28904 24571856 ~ 24582421 (-) True XLOC_022362
TCONS_00044126 other upstream 132255 24675207 ~ 24675303 (-) True XLOC_022366
TCONS_00044131 other upstream 306535 24849487 ~ 24849604 (-) True XLOC_022369
TCONS_00044132 other upstream 337275 24880227 ~ 24926348 (-) True XLOC_022370
TCONS_00044148 other upstream 1246180 25789132 ~ 25792981 (-) False XLOC_022380

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_08675171_08691078.mRNA True 3643 mRNA 0.48 28 CI01000001 8674946 ~ 8691078 (-)