XLOC_022348


Basic Information

Item Value
gene id XLOC_022348
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24184521 ~ 24187176 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045009
CTACACCATGGTAATTGTGGGCAACCATTTCCATGCCTCTGTcaagattgtttatgttttttcagAACATGGGGCAACCTTAGATCACATTCATCAAGACATCAAACTTAGAAAACCTCCAGATTTGcagaaagtttttattttacttgtcctTGTTGCAATGCCATGACAATTTCCATAGACATAAAAAAACACGAAACTGTCATCTGTGTATTTCAGAACTGCAATTTCAGAACTAACATTTATGGTACATTTGCTTCCCACAGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTATGTATGTTCATTCAATGCAGATCAACACAATGATGTATAAGGTCAAAGTGGGGAGCTGTCTGATAAAGGTCAAGATGACAATAATGATGTGACAGACCTGCCaaactgcatagaaaaaaaaatggctttgttgtttctaaaactggaGAGCACTTTTAATGTATCTTACAGGTGTATAGAAGAGGTTGTTTAAGAGTTCAATTTTATATCTTGATCAGCATCTGGACCCATCATCAAAGGTATTTTACAGTCCTGCTTGGGTTGTAAAGCCCATCTTACAGTCCACAAATCTGTCTAATGTAAACCTTTTGCATgaagtaacaaaaataaacaattttcaaGTTGTTGCAGATAAAATGGGCAAGAAATATGGGGTATCTAGGAGCGCTGGCCTGCATTATCAGATGCAACACAGgtaagtttagttttatttttagtctAGTTTCTAGTTTCAAGTTATTTATGCTAAAAACTTCTTACAACAATAACATATTACATGTTATTTGTTGTGTTACACATTGTATACAATTATTccattattttaatattctatTTTTTCTACAGATAAATGAAGAATTCAAGAGTATAACCACTGTAGGTCTTGAATCCACATTTATGGCCAAACTTGACAAATGCACCCCAAAACTAATGGACCTGGCCTCATCCAGGGGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGgtattgtaaataatttgtacACACTAGAATAGTTTAGATTTGTGTTAAATTGTCAGGTTGCCATCAGTTGTTTGTTCAGATAAAACTATATTCATTTACTGTAGGTACTTTATcttgatatatatttttctaattaaaCAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTCAAGGAGTTTGCTGTGAGtattacaatgttttaaaataaaaaattaaatcttcCCTTGACAGTGGAAACATACAAGGCAAAATATATGCTCAATGACTGCTCTCTTTTAGTTTAATGTGTAGGTATATTACATTGTCCACACACACTGGGCTTACCTAGCTCTGTGTTATAATAACAATGTACTATTTAGTTTAACTGAAAgttaattataaatttaattatctCTATCATgctaatctattttttttttatcttgcttTACAAGAATACACAAGAATTTGAGGCAGACCTTGAAAAGCAAGTGATGACAATTGCCATCATTGGTGATCTGTCAACTATGGTATTAAACCACAAGACGGGAACCATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATATCTCAAGGTGTTGTGCTCTGCTGATAGGCATAATATATGCTCTGAATCTGAGCCACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCAGAAGCTGTTTCTTGAACTTGATGGACTGAAGCCCAGTGCAAAAGTAATGCGTCTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTTGCTCTTTATGTTGCaactatattgttttgtattttgaagTCCACATGCTGATCTTTTTATTTCAAACTGTGTATATGAATGGTGGcatttatatatgtttgtttataataatacaaatgttacATGTTGTACAATTAAGGTTAACTAATAACAAGTAGTttgtaaaatgtacaatttataaGTTAATAGTTAGCTTTAAGTGTATCAATGCctataattattgttttgttgGAATTCATTGTGATGGCATAGCTATGCATGCATGAAC
>TCONS_00044100
AGACCATTTGACACAAAGGATACTTTAAGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTGTATAGAAGAGGTTGTTTAAGAGTTCAATTTTATATCTTGATCAGCATCTGGACCCATCATCAAAGTTGTTGCAGATAAAATGGGCAAGAAATATGGGGTATCTAGGAGCGCTGGCCTGCATTATCAGATGCAACACAGATAAATGAAGAATTCAAGAGTATAACCACTGTAGGTCTTGAATCCACATTTATGGCCAAACTTGACAAATGCACCCCAAAACTAATGGACCTGGCCTCATCCAGGGGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTCAAGGAGTTTGCTGATGACAATTGCCATCATTGGTGATCTGTCAACTATGGTATTAAACCACAAGACGGGAACCATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATATCTCAAGGTGTTGTGCTCTGCTGATAGGCATAATATATGCTCTGAATCTGAGCCACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCAGAAGCTGTTTCTTGAACTTGATGGACTGAAGCCCAGTGCAAAAGTAATGCGTCTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTTGCTCTTTATGTTGCaactatattgttttgtattttgaagTCCACATGCTGATCTTTTTATTTCAAACTGTGTATATGAATGGTGGcatttatatatgtttgtttataataatacaaatgttacATGTTGTACAATTAAGGTTAACTAATAACAAGTAGTttgtaaaatgtacaatttataaGTTAATAGTTAGCTTTAAGTGTATCAATGCctataattattgttttgttgGAATTCATTGTGATGGCATAGCTATGCATGCATGAAC

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0048732 gland development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0021546 rhombomere development biological_process
GO:0007492 endoderm development biological_process
GO:0021548 pons development biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0043049 otic placode formation biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0048857 neural nucleus development biological_process
GO:0010467 gene expression biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0001889 liver development biological_process
GO:0003002 regionalization biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0030903 notochord development biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0030916 otic vesicle formation biological_process
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045009 False 2131 lncRNA 0.34 1 24184521 24186651
TCONS_00044100 True 1037 lncRNA 0.37 7 24184521 24187176

Neighbor

gene id symbol gene type direction distance location
XLOC_022346 arhgef19 coding downstream 17171 24140043 ~ 24167350 (-)
XLOC_022345 NA coding downstream 68564 24057410 ~ 24115957 (-)
XLOC_022344 CR925720.1 coding downstream 137467 24046032 ~ 24047054 (-)
XLOC_022343 NA coding downstream 735438 23379465 ~ 23449083 (-)
XLOC_022342 si:dkey-98j1.5 coding downstream 927795 23254976 ~ 23256726 (-)
XLOC_022349 plekhm2 coding upstream 15383 24202559 ~ 24226533 (-)
XLOC_022350 ddost coding upstream 40120 24227296 ~ 24234371 (-)
XLOC_022351 zbtb17 coding upstream 51276 24238452 ~ 24253200 (-)
XLOC_022352 hspb7 coding upstream 71147 24258323 ~ 24263474 (-)
XLOC_022353 fam131c coding upstream 113475 24300651 ~ 24343363 (-)
XLOC_022341 NA non-coding downstream 930726 23193876 ~ 23253795 (-)
XLOC_022339 NA non-coding downstream 1160526 23012288 ~ 23023995 (-)
XLOC_022338 AL954857.1 non-coding downstream 1320950 22863457 ~ 22863571 (-)
XLOC_022358 NA non-coding upstream 308977 24496153 ~ 24500128 (-)
XLOC_022359 NA non-coding upstream 320678 24507854 ~ 24508822 (-)
XLOC_022363 NA non-coding upstream 421282 24608458 ~ 24611654 (-)
XLOC_022364 NA non-coding upstream 474130 24661306 ~ 24666612 (-)
XLOC_022366 dre-mir-26b non-coding upstream 488031 24675207 ~ 24675303 (-)

Expression


Co-expression Network