RNA id: TCONS_00044134


Basic Information

Item Value
RNA id TCONS_00044134
length 1470
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_022371
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24941299 ~ 24955155 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGAAACTTGCAGAAGGCTCCTCTCATGCTCAGCGGGTGCTGTCTTTGCTCAACAAGCAGAGAGCTTTTGGCCATTTCTGTGATGCCATGCTGTGCACAGCGAGCGGACAGGTGCATCTGGCCCATCGCAATGTCCTGGCCTGCTTCAGCCAGTTGTTCCAGGAACCCACCTCAAAAACACCATCTATAAAGTTTGACCTCCCTTTAGAGTGTCCCGATGATGGACTCGAGCTACTGCTGAATTTCTTCTACACTGGTGATCTCCAGCTAGACGACAGCAATCTGGAAAAAGTCCAAAATGCAGCCAGCGGATTATCGGTGCCTGTTTTTCTTATACCCTGCCAGGGTATAAAAACTCCTGACCTGAATGAAGGTGATCCATCAAAACCACTGCTTTCAGAGCCTCAGCCTGATCAGACTCCGAATAAAAAGACTAGATCTGGACAGAGGACCAAAaataaagctgatgcatttaagTTGAGTACAGCAAGCGATGATGAGCCTCCTGCATTAAAGTCTACTACTGTCACACGTTCTGGAAGACGTGTAAAAGGGCCCAGTCGACTGGTTGGTGAAAGTCAAATTTCTGTTGTTACCAGACTAGGAGTGGGAAGGAGAAAAGCATCATTTGTAGAAGACAAAGAGCAGGAGACTGGAGCTACTGAAGATGGAGATCATCCCAGACATGAGGATGCAAGTGAGACTACCCAGACTACTGAGGTGGATATATCTGTTGATGACCaaaatgatgacgatgatgatgttGAGGATGCTGCCAATAATGACGATGACAGTGACAGAGGTGGAAGTGTGGATATTATTATTGAGGGAACTGATGAAGAGTATGTGCCTCATGATTCACCTTGCTCAAGCACAAAGACTCCACGGGGAAAACGAAAAGAGAAAAGTAGCAATAAAAAGAATGGGGAAGGAACGTCAAAAGACAGCAAGAAAGGGGCCGTCCAGTGTCCAACGTGTCACAAAACGTTTCTCAGCAAATATTACCTCAAAGTACACAACAGGagacacactggagaaaagccgttTAAATGTGGCAAATGTGGGAAGTGCTACTTTAGAAAGGAAAACCTGCTGGAGCACGAAGCCAGAAACTGTCTGACCAGAACAGAACTGGTGAGTTTGATATTGAAGAACAATGCAAATAAGCACAATTGCTGCATACTAGTACTTACTGTACTTAATACAACTTGTCAAATTTTGGGTTCGTGCCAGGTGTTTTCATGTTCAAAATGTAGCATGACCTTTAAAAAGCGGCAAGAGCTGCGTCATCACACAGTCATGCACACAGGAGTGATGCCCAATAAGTGCACGTCGTGCCCTGAGCAGTTCATGCAGAAGAGAGACCTCAAGATCCACATGATTAAAGTCCATGGAGCTCCCAAACCACATGCAGTAAGTGACTTTAATGTTAAGCACTTAGGCAAAACTGTTTATCTTACGACTTAG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005694 chromosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0043035 chromatin insulator sequence binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-4450 Predicted to enable chromatin insulator sequence binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in chromosome. Orthologous to human ZBTB48 (zinc finger and BTB domain containing 48).

Ensembl:

ensembl_id ENSDART00000192085

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044125 lncRNA downstream 266636 24672168 ~ 24682006 (-) False XLOC_022365
TCONS_00044127 lncRNA downstream 271008 24676137 ~ 24677634 (-) True XLOC_022365
TCONS_00045012 lncRNA downstream 282030 24661306 ~ 24666612 (-) True XLOC_022364
TCONS_00044123 lncRNA downstream 336988 24608458 ~ 24611654 (-) True XLOC_022363
TCONS_00045011 lncRNA downstream 439820 24507854 ~ 24508822 (-) True XLOC_022359
TCONS_00045013 lncRNA upstream 141609 25093873 ~ 25094328 (-) True XLOC_022373
TCONS_00045014 lncRNA upstream 350466 25302730 ~ 25304019 (-) True XLOC_022376
TCONS_00044147 lncRNA upstream 818817 25771081 ~ 25774562 (-) True XLOC_022378
TCONS_00045015 lncRNA upstream 831431 25783695 ~ 25785905 (-) False XLOC_022379
TCONS_00045016 lncRNA upstream 831431 25783695 ~ 25785982 (-) False XLOC_022379
TCONS_00044130 mRNA downstream 92617 24803101 ~ 24856025 (-) True XLOC_022368
TCONS_00044129 mRNA downstream 122779 24802899 ~ 24825863 (-) False XLOC_022368
TCONS_00044128 mRNA downstream 249242 24693533 ~ 24699400 (-) True XLOC_022367
TCONS_00044124 mRNA downstream 266398 24669035 ~ 24682244 (-) False XLOC_022365
TCONS_00044121 mRNA downstream 366036 24571812 ~ 24582606 (-) False XLOC_022362
TCONS_00044136 mRNA upstream 86731 25038995 ~ 25050329 (-) False XLOC_022372
TCONS_00044138 mRNA upstream 86731 25038995 ~ 25050521 (-) False XLOC_022372
TCONS_00044137 mRNA upstream 86731 25038995 ~ 25050521 (-) True XLOC_022372
TCONS_00044139 mRNA upstream 143304 25095568 ~ 25098913 (-) True XLOC_022374
TCONS_00044140 mRNA upstream 169734 25121998 ~ 25126003 (-) False XLOC_022375
TCONS_00044132 other downstream 22294 24880227 ~ 24926348 (-) True XLOC_022370
TCONS_00044131 other downstream 99038 24849487 ~ 24849604 (-) True XLOC_022369
TCONS_00044126 other downstream 273339 24675207 ~ 24675303 (-) True XLOC_022366
TCONS_00044122 other downstream 366221 24571856 ~ 24582421 (-) True XLOC_022362
TCONS_00044112 other downstream 504388 24443182 ~ 24444254 (-) False XLOC_022355
TCONS_00044148 other upstream 836868 25789132 ~ 25792981 (-) False XLOC_022380
TCONS_00044178 other upstream 1723388 26675652 ~ 26675770 (-) True XLOC_022392
TCONS_00044183 other upstream 1866850 26819114 ~ 26821768 (-) True XLOC_022395
TCONS_00044197 other upstream 2254455 27206719 ~ 27235654 (-) False XLOC_022399
TCONS_00044212 other upstream 2627900 27580164 ~ 27580292 (-) True XLOC_022408

Expression Profile

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