G130854


Basic Information

Item Value
gene id G130854
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9978855 ~ 9981835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176939
agtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattgattcaagcagttcagtttggtggtttgatggcttgtgatcatccatcttcctcttgattatattccagagatttttaatttggtaaaattaaagaaactcatcctttttaggtgctctcttattttacaGGGTCGTGAGGGCGTGGCCGAGTCCTCCATCCTGCTGCTGGCAGCTTCCTCCCGACACAAGTAATCAAGAATAGGCCGTACTACAGAGAACCAACCTATCCTGGATTACTTGAACCAGGCAAAAGCCGAAACCGGATTCCCAGAGGATCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176939 True 338 lncRNA 0.43 2 9978855 9981835

Neighbor

gene id symbol gene type direction distance location
LOC103039028 LOC108433422 coding upstream 2248 9929835 ~ 9976607 (+)
LOC103043867 LOC108433414,LOC104967021,LOC106572606 coding upstream 132113 9822632 ~ 9846742 (+)
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107599644,LOC107697860 coding upstream 179962 9796191 ~ 9798893 (+)
LOC103044467 LOC108433411,LOC108276259 coding upstream 185439 9774110 ~ 9793416 (+)
LOC111194074 calcoco1a,LOC108433409 coding upstream 333089 9618358 ~ 9645766 (+)
c1qtnf12 fam132a,LOC107591142,LOC107687484,LOC107716139,LOC107593919 coding downstream 39930 10021765 ~ 10060015 (+)
LOC103041698 olfml3a,LOC108433368,LOC107716140,LOC107687444,LOC107593917,LOC108276296 coding downstream 126331 10108166 ~ 10115520 (+)
klhl21 klhl21,LOC107687446,LOC107593916,LOC107716146 coding downstream 264743 10246578 ~ 10263598 (+)
nol9 nol9 coding downstream 289935 10271770 ~ 10284418 (+)
LOC103040473 LOC108441408,LOC107695825,LOC107568460,LOC107570209,LOC107668563 coding downstream 309138 10290973 ~ 10312887 (+)
G130855 NA non-coding upstream 259 9946210 ~ 9978596 (+)
G130864 kansl2,LOC107591080,LOC107737532,LOC107716132,LOC107687436,LOC107593923 non-coding upstream 99278 9878308 ~ 9879577 (+)
G130842 NA non-coding upstream 130655 9819634 ~ 9848200 (+)
G130849 NA non-coding upstream 149435 9829159 ~ 9829420 (+)
G130814 NA non-coding upstream 310753 9665520 ~ 9668102 (+)
G130884 NA non-coding downstream 25184 10007019 ~ 10012404 (+)
G130935 NA non-coding downstream 84040 10065875 ~ 10066115 (+)
G130936 NA non-coding downstream 84984 10066819 ~ 10067075 (+)
G130938 NA non-coding downstream 103737 10085572 ~ 10089354 (+)
G130944 NA non-coding downstream 152892 10134727 ~ 10191841 (+)
LOC103038829 NA other upstream 50622 9922981 ~ 9928233 (+)
mlh3 mlh3,LOC107591079 other upstream 57860 9911307 ~ 9920995 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other upstream 107083 9856406 ~ 9871772 (+)
G130844 NA other upstream 221504 9756952 ~ 9757351 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other upstream 656775 9306154 ~ 9322080 (+)
LOC107197146 NA other downstream 834025 10815860 ~ 10829558 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other downstream 1509728 11491563 ~ 11502723 (+)
LOC111194085 LOC108425553 other downstream 1940505 11922340 ~ 11978761 (+)
LOC103031050 NA other downstream 2258861 12240696 ~ 12334090 (+)
sall4 sall4 other downstream 2707319 12689154 ~ 12763710 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022366 dre-mir-26b non-coding NC_007134.7 CM002907.2 24675207 ~ 24675303 (-)
striped catfish (Pangasianodon hypophthalmus) LOC113530699 NA non-coding NC_047610.1 CM018556.1 20058251 ~ 20070248 (+)