klhl21 (klhl21,LOC107687446,LOC107593916,LOC107716146)


Basic Information

Item Value
gene id klhl21
gene name klhl21,LOC107687446,LOC107593916,LOC107716146
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 10246578 ~ 10263598 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677101.1
agccaatcagagcgcagCGGCTGAGAGGAGTCATGGCGCTgaggtgaaggaggaggaggccggagctgaagtttattttacCCACAGAAACGGAGGAACCGGGGGATCTGCGGGGGAATAGAGCCTGGAACAGCGCCGCGGGCTGAGCTGAGGATCCGGGCGGGGGTTTAGCAGATGAATCGAGTGTTTTGATCACAGCAGCGTAAAGAGACAGATATTGATCAGTAAAGGCTTTGTCATGGAGAAGCCGGCTCTGCAGACGCAGTCCTCCATGCTGCCGTTCTTTGACACGGCGCACGCCATCAACCTCCTGCGAGGGATCCACGAGCTGCGTGCTGAGCGCAAGTTCTTCGACGTGACTCTCTGTGCCGAGGGCAAGGAGTTCCACTGCCACCGCACCGTGCTCGCCGCTGCCAGCACCTACTTCCGCGCCATGTTCGCGGGGACGCTGCGGGAGAGCGCCATGGACCGCGTGGTGCTGCACGAGGTGTCGGCCGAGCTGCTCGGACTGTTGGTGGACTTCTGCTACACGGGGCGCGTCACGGTCACGCACGACAACGTGGACCTTCTGCTGAAAACCGCCGACCTCTTCCAGTTCCCCTCCGTTAAAGAGGCCTGCTGCGCCTTCCTGGAGCAGAGGCTGGACGTCTCCAACTGCCTGGAGATCCAGGACTTCGCCGAGGCGTACGCCTGCCGGGAACTGGCGGCGAGCGCCCGGCGCTTCGTGCTGAAGAACATTGTGGAATTGGCGAAGGGCATGGATTTCGAGAGGCTGCCGTGGAAGCGGTTGCTGGAGTTCGTCTCTGACGACGGGCTGTGTGTGGATAAGGAGGAGACGGCGTATCAGATCGCAGTGCGCTGGGTTAAAGCCGATTTGCAGAGGAGGCTGCACTACTGGCCCGAGCTGCTGCAGCAGGTCCGCCTGCCCTTCATGCGCCGCTTCTTCCTCCTGGCTCACGTCGAGAGTGACCCGCTGGTCTACCTGTCGCCGGCGTGTTTGCGGCTGGTCAGCGAAGCCCGAAGCTTCCAGTCCTGCGAATACGACCGGCACGACCGGCCCTGCCACCGCATGCACCCGCGACCGTCCACCGGCCTGGCGGAGATCCTGGTGGTGATTGGCGGCTGTGATCAGGACTGTGATGAGCTCGTCACTGTGGACTGTTTTAACCCTCAGACCGGCCAGTGGAGGTACCTGGCCGAGTTCCCCGACCACCTTGGAGGAGGATACAGCATCGCGGCGCTGGGCAACGATATTTACGTCACAGGCGGTTCTGACGGCTCCCGGCTCTACGACGGCGTTTGGCGCTATAACTCCAGTGTTAACGAGTGGACGGAGGCGTCGCCCATGCTGAAGCCCCGTGAGTACCACAGCTCCTGCGTGCTGAAGGGTCAGCTGTACGTTGTGGCGTCGGACAGCACAGAGCGGTACGACCACACTCTGGACTGCTGGGAGGCTCTGCCACCGATGCTGCACCCCATGGACAACTGCTCCACCACGGCCTGCGGCGGACGGCTCTACGCCATCGGCTCCCTGACCGACGAGGACACCATGGCCATCCAGTGCTACGACAGCGAGTCCAACCGCTGGAGCCTCGTCAACTGCGGACAGCTGCCCCCCTGGTCCTTCGCCCCCAAATCCATCACTCTCAACGGGTTCATCTACTTCGTGAGGGACGACTCAGCAGAAGTTGACGTCTACAATCCACAGAAGAACGAATGGGATAAAATTAATCCAATGAACCAAgtgcACGTGGGAGGCAGCGTGTCCGCCCTCGGCGGACGTCTCTACGTGTCTGGAGGCTACGACAACACCTTCGAGCTCTCGGACGTGGTGGAGGCGTACGACCCCTCCACCCGCACGTGGAGCCCGGCCGGCCGCCTCCCCCAGCCCACCTTCTGGCACGGCAGCGTCAGCATCTTCCGGCAGTTCATGCCCCTCGTCTCCAGCAGCTTCGAGCCCATCGACCTGCCGGAGGCCAACGACATCCACCTGCACCACCGGCACCACCGCAACCAGGCCCTTCACAACAACCGCAACAACCAGCTCAACCACAACCAGCAGGTCTTCCCATCACTCCCAGTTCCCTGAAGCTCCAACTCCAGATCTGATTGGATGGGGAAAGCGTCGCTCACCAGCAC
>XM_022677102.1
AGCGGCTGCAGTGTGAGGAGTACTTCCCCACCCCCTCCTGTAGAAATGGACACTGTAGATGTATTTATAGATCAGGAGACGAGTCGGGCAGCGTTTCTGTAGAGAGTAACGGACACATGGCTTCATCATAACAGTGTGAAATCTCAGTCTAGAAGCTTCTGACTCAGACTCCTCAGCTCTGTGGTTTCAGTAGATAGAGACGCCTGGAAAGGCAGCTCGGATGAATCGAGTGTTTTGATCACAGCAGCGTAAAGAGACAGATATTGATCAGTAAAGGCTTTGTCATGGAGAAGCCGGCTCTGCAGACGCAGTCCTCCATGCTGCCGTTCTTTGACACGGCGCACGCCATCAACCTCCTGCGAGGGATCCACGAGCTGCGTGCTGAGCGCAAGTTCTTCGACGTGACTCTCTGTGCCGAGGGCAAGGAGTTCCACTGCCACCGCACCGTGCTCGCCGCTGCCAGCACCTACTTCCGCGCCATGTTCGCGGGGACGCTGCGGGAGAGCGCCATGGACCGCGTGGTGCTGCACGAGGTGTCGGCCGAGCTGCTCGGACTGTTGGTGGACTTCTGCTACACGGGGCGCGTCACGGTCACGCACGACAACGTGGACCTTCTGCTGAAAACCGCCGACCTCTTCCAGTTCCCCTCCGTTAAAGAGGCCTGCTGCGCCTTCCTGGAGCAGAGGCTGGACGTCTCCAACTGCCTGGAGATCCAGGACTTCGCCGAGGCGTACGCCTGCCGGGAACTGGCGGCGAGCGCCCGGCGCTTCGTGCTGAAGAACATTGTGGAATTGGCGAAGGGCATGGATTTCGAGAGGCTGCCGTGGAAGCGGTTGCTGGAGTTCGTCTCTGACGACGGGCTGTGTGTGGATAAGGAGGAGACGGCGTATCAGATCGCAGTGCGCTGGGTTAAAGCCGATTTGCAGAGGAGGCTGCACTACTGGCCCGAGCTGCTGCAGCAGGTCCGCCTGCCCTTCATGCGCCGCTTCTTCCTCCTGGCTCACGTCGAGAGTGACCCGCTGGTCTACCTGTCGCCGGCGTGTTTGCGGCTGGTCAGCGAAGCCCGAAGCTTCCAGTCCTGCGAATACGACCGGCACGACCGGCCCTGCCACCGCATGCACCCGCGACCGTCCACCGGCCTGGCGGAGATCCTGGTGGTGATTGGCGGCTGTGATCAGGACTGTGATGAGCTCGTCACTGTGGACTGTTTTAACCCTCAGACCGGCCAGTGGAGGTACCTGGCCGAGTTCCCCGACCACCTTGGAGGAGGATACAGCATCGCGGCGCTGGGCAACGATATTTACGTCACAGGCGGTTCTGACGGCTCCCGGCTCTACGACGGCGTTTGGCGCTATAACTCCAGTGTTAACGAGTGGACGGAGGCGTCGCCCATGCTGAAGCCCCGTGAGTACCACAGCTCCTGCGTGCTGAAGGGTCAGCTGTACGTTGTGGCGTCGGACAGCACAGAGCGGTACGACCACACTCTGGACTGCTGGGAGGCTCTGCCACCGATGCTGCACCCCATGGACAACTGCTCCACCACGGCCTGCGGCGGACGGCTCTACGCCATCGGCTCCCTGACCGACGAGGACACCATGGCCATCCAGTGCTACGACAGCGAGTCCAACCGCTGGAGCCTCGTCAACTGCGGACAGCTGCCCCCCTGGTCCTTCGCCCCCAAATCCATCACTCTCAACGGGTTCATCTACTTCGTGAGGGACGACTCAGCAGAAGTTGACGTCTACAATCCACAGAAGAACGAATGGGATAAAATTAATCCAATGAACCAAgtgcACGTGGGAGGCAGCGTGTCCGCCCTCGGCGGACGTCTCTACGTGTCTGGAGGCTACGACAACACCTTCGAGCTCTCGGACGTGGTGGAGGCGTACGACCCCTCCACCCGCACGTGGAGCCCGGCCGGCCGCCTCCCCCAGCCCACCTTCTGGCACGGCAGCGTCAGCATCTTCCGGCAGTTCATGCCCCTCGTCTCCAGCAGCTTCGAGCCCATCGACCTGCCGGAGGCCAACGACATCCACCTGCACCACCGGCACCACCGCAACCAGGCCCTTCACAACAACCGCAACAACCAGCTCAACCACAACCAGCAGGTCTTCCCATCACTCCCAGTTCCCTGAAGCTCCAACTCCAGATCTGATTGGATGGGGAAAGCGTCGCTCACCAGCAC

Function

symbol description
klhl21 Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in chromosome passenger complex localization to spindle midzone; protein ubiquitination; and regulation of cytokinesis. Predicted to act upstream of or within cell division. Predicted to be located in polar microtubule. Predicted to be part of Cul3-RING ubiquitin ligase complex. Orthologous to human KLHL21 (kelch like family member 21).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0035853 chromosome passenger complex localization to spindle midzone biological_process
GO:0016567 protein ubiquitination biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005827 polar microtubule cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10458 KLHL21; kelch-like protein 21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677101.1 False 2139 mRNA 0.62 6 10246578 10263598
XM_022677102.1 True 2185 mRNA 0.61 6 10252236 10263598

Neighbor

gene id symbol gene type direction distance location
LOC103041698 olfml3a,LOC108433368,LOC107716140,LOC107687444,LOC107593917,LOC108276296 coding upstream 131058 10108166 ~ 10115520 (+)
c1qtnf12 fam132a,LOC107591142,LOC107687484,LOC107716139,LOC107593919 coding upstream 186563 10021765 ~ 10060015 (+)
LOC103039028 LOC108433422 coding upstream 269971 9929835 ~ 9976607 (+)
LOC103043867 LOC108433414,LOC104967021,LOC106572606 coding upstream 399836 9822632 ~ 9846742 (+)
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107599644,LOC107697860 coding upstream 447685 9796191 ~ 9798893 (+)
nol9 nol9 coding downstream 8172 10271770 ~ 10284418 (+)
LOC103040473 LOC108441408,LOC107695825,LOC107568460,LOC107570209,LOC107668563 coding downstream 27375 10290973 ~ 10312887 (+)
LOC103036206 LOC108441407,LOC108276043,LOC108232157,LOC103467627,LOC102232098,LOC102300702,LOC101484387 coding downstream 51435 10315033 ~ 10328378 (+)
hspg2 hspg2 coding downstream 83861 10347459 ~ 10503227 (+)
tmem269 pss,LOC108275772,LOC100689985,LOC107570193,LOC108441403,LOC107668567,LOC107695831,LOC107568457,LOC101473555,LOC102292634 coding downstream 244358 10507956 ~ 10520812 (+)
G130980 NA non-coding upstream 13600 10232305 ~ 10232978 (+)
G130944 NA non-coding upstream 54737 10134727 ~ 10191841 (+)
G130938 NA non-coding upstream 157224 10085572 ~ 10089354 (+)
G130936 NA non-coding upstream 179503 10066819 ~ 10067075 (+)
G130935 NA non-coding upstream 180463 10065875 ~ 10066115 (+)
G130989 NA non-coding downstream 29444 10293042 ~ 10329283 (+)
G130993 NA non-coding downstream 65076 10328674 ~ 10398075 (+)
G131001 NA non-coding downstream 111009 10374607 ~ 10376602 (+)
G131000 NA non-coding downstream 229488 10493086 ~ 10505534 (+)
G131009 NA non-coding downstream 252895 10516493 ~ 10580195 (+)
LOC103038829 NA other upstream 318345 9922981 ~ 9928233 (+)
mlh3 mlh3,LOC107591079 other upstream 325583 9911307 ~ 9920995 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other upstream 374806 9856406 ~ 9871772 (+)
G130844 NA other upstream 489227 9756952 ~ 9757351 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other upstream 924498 9306154 ~ 9322080 (+)
LOC107197146 NA other downstream 552262 10815860 ~ 10829558 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other downstream 1227965 11491563 ~ 11502723 (+)
LOC111194085 LOC108425553 other downstream 1658742 11922340 ~ 11978761 (+)
LOC103031050 NA other downstream 1977098 12240696 ~ 12334090 (+)
sall4 sall4 other downstream 2425556 12689154 ~ 12763710 (+)

Expression


Co-expression Network