mlh3 (mlh3,LOC107591079)


Basic Information

Item Value
gene id mlh3
gene name mlh3,LOC107591079
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9911307 ~ 9920995 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176968
AGGTTATTCATCAAGTAGACAAGAAATTCCTCGCCTGTCTTATAAACACAACAGACCAGGAGAGCACAGAGACGAGTCAagGAaacctgctggtgctgctggatCAACACGCTGCACATGAAAGGGTTCGCCTGGAGGGGCTTCTAACAGAGTcgtatgaagatgatccagaTACTCCAGGTAAAAACAGGCTGTGCTCCTCAGGTGTGATTCCTCCTCTGGAGATCAGTGTGAGCGAGGAGGAGATCAGACTGTTAAGGTTGTATCAGTCTTCTCTAAGAGATCTGGCTCTAGAGATGAGCTTTCCCCCAGCAGATCCCTCACACGTGCTTCTGGAGCGACTCCCCACCTGTTTTATTGAGAAGGAGAACACAGAGCAGCGGCGCGGCCGACGCACCGTCATCAAGTCTCTCTCAGAggtctttaaatatatttaaaataagctgAAAGTTTAATTAAGAGGGCAGAAAttgatcgttttttttttctgtcaattCAGGAATACTTGCGGGAGCACATTGAGTTTCTGCAGTCGGCAGGAAGAGTGAGGAGCTCTGTGCCTCTCACCGTCCACAACGTCCTCGCTTCACAAGCCTGTCATGGAGCAATTAAATTCAATGATGTTTTGAGTAAAGAGGAGTGCTGCAGTCTGGTGGGATCCCTCTCATCCTGCCAGCTGCCCTTTCAGTGTGCCCACGGCAGACCCTCCATCGTCCCTCTGGTTGATCTTCTTCACTTAGAGGACGAGCAGGACCTTCCAAAACCGAACCTCAAGAAACTGAGAAGAATGTACAAGGCATGGCAGCTTTATGGACAGAATTAATTTATGCAAAATATGAATTTCAGGAAAGAAGATGCActttaca
>XM_007235742.3
agagactCTCTGATTGTAGATCATAACAGAGCCGGTGAACCGGCGGGTTGTTATGGGGGGAAACTCGAGCGCTTATTTtggatttactgtaatttataacatatttattCATCTAAAACGTTGTTTTTGTGGTTCCTAAAGATAACCCAGTAAACAGGGCGCTGTTACAGCTGTCTGAGGGAAGAAGCGGGgcgcttttaaactgtaaattggGAGATTTCTCCTTTTTAACCCAATATGTTGTGTTTACCTTAAATCTGGGGCTGTTATTTAAAGaatgatcAGGACTCTTTCCAAAGAAGTTCAAGCGAAGCTGCGTTCTGGCGTCGCTGTTTTCTccctgcagcagtgtgtggaggagcTTGTTCTGAACAGCATTGATGCTGGAGCGACATGCATCGCTGTGAAGATCGACATCGAAGCCTGCAAAGTTCAGGTGATAGACAACGGCTCCGGGATGAGCCGAGAGGACATGGAGAAGGTGGGGACGAGGTACTGCACCAGCAAGTGCAGCTCGCTGGAGGACCTGGATGACCTGAGATTCTATGGGTTCAGAGGGGAGGCCATTGCCAGCATCGCCTCTCTTTCTACCTTGGTGGAAATATCCTCACAGACCAAGGCGTCGGTGAAAACGTTCGTTAAAACCTTTAATGAAGGCAGGGGGTCAGGCGTTTGCGAGGTGCAGGATACCCGTCCGTCACCCGGGACTACGGTGCTGATCTGCAACTTCTTTCATAACATGCCGGTCAGGAGGAAGAGGATGGACTCTGTGCTGGAGGTTGAGCGTCTTCGGCAGAGAGTGGAGGCCATATCCCTGATGCATCCGTCCGTATCGTTCACTGTGAAGAAGGACTGCTCGGGGACCATGCTGGTGCAGCTTCCCAAAGCCAGGAATACCTACTACAGGTTTGTTCAGATCCATGGATTGGGAAGAGCTCAGAAGCTCAGAGAGGTGAACTTCACTCACGGACAGTTTGAGATGACTGGATCGATTGGGCGCGAGGGTCATTACAAAAACAGCCTGCAGTTTTTGTTCGTAAACAGCAGACTCGTGCTGAAAACACGCCTTCACAAACTACTCAACTGCCTGCTCAGGAAACTGAGCAGCTCTAGCATCCAAAACAACAGTCCCAATGCCTCTGCTGTCACCTCCAGCCCCAAGCAAAGAGGAGGCGCCGATTCACACGGCGTTTACGTCATCAACCTGAAGTGCCCCTACTCTGATTATGATGTTTGCCTGGAGCCGGCGAAGAGTCTTATCGAGTTCAGAGATTGGGACGCTGTCCTCTTCTGCGTCGAGGAAGGCGTGAAATCGTTTCTCACAAAGGAAAACTTGGTCTCAGAATTTTCTGTGAGTGACGCCCAAACCTTTGCGAGTGTTTTTAGCGACCCAACAGGTAGTAGTTGCCCATGCAGTAAAGCGACGGCACAGTCGCGGGACAAAGAGTCGACAGTGTGCGAAAGTGACTTAAACGGAAATATGACTCAGGTTAACTCAGGTGATCAAACGGAAAGTGTCCAAAATCTAAGTTTCGACCAAATTTTTGACAGAGGGTCCTCAAATGCAGAGTCTGCGGCAGGTTCAGAAGCAGAGGCAGAAAGTAAAGAAGTTCAGAGTGTTGAAAAACCTTCGCTGCAGAGAGATCTCGAAGATTACGGGAATTCGCAAGACTTTGAAACGAGTGTCCATGACCTGCAACTTATTGATACCCTCAGCAACAACAGTACAATGACACATCAGGAATTTACGCAAAGCAAGGTTGCCGTAATTGGTCCTAACGAAGCTCAGGACAGTTTGAGAAGATTTGCAGAGCCTAACATCTGCTGTGCACCAAAGAGAAAACTGTCCTTGCTCCAAACTCAGAGTTTGTGCTTAGAAAGTGGCGTTGGGCCCAAAATGGCAAAGGTCGCGCCACGTCGCAAATTAACACTGGCTTTTGAAACGGGATCTCTTGACAAGTTCAAGAGGATGTACGGAAAATCTTCTGAGACAAAACGTCAGTCTGTGGAAACACAAATCGCTAATGCTTTACAACCTTCAGACTGTGTATTATCTTCTGAAGGTCCTGCATTGCCTGCTTTACAAGGTACCGGCGTCAGTTCACTCATCTTTGAGCCTGAACAAGTCGAAAAGACTGAAAAGACTCATTCTGAGAACTTCTTAATCAAAAAAGACAGTATGCTTACACTTTCTGCTTACAGCCAAACGAAATGTTCAACATCAGCCAGCTCAAGGACTAAAATATCATTAGCTGCAAAGCTCTCGCACTTAAAATGCGACAAGATAGTTCAGAAGGAGAAAACACCTTATGAAGAAGGAACTTTTGATGATACCAGAAATGAAGAAACTACCTCTGTAACCCAACATGCTCAACGTGCAGCAGACTCTGAGGAGACGTTTGAAGACTCTCTGTCTCAGTTTAAAACTTCAGAGGACACTGACGGTTCTTCAAAACAAATGACTGAGACAAATGATCCAAATGAACCCACCCACAAATTCACTGTTCCCAATTTACCTAACCCATCAGCTGGAGACGCTCTAAAAAGAGTTTCTGAACTCATGACTTCCTCAGAGCCAGCTATTCCCTCAGGACACGTAATTAACCCTGCATCACAACATGAGCCTCTGCCCACCCAAACAGGAAATGAGGTCCAGGCTCCAGACGAAAGTCCGGGCGATGAAAGTGATGTGCCGGCCCTGGTGTCGAGTGACTGGAGGACACATTACGACGACTCTCTGGGAAAGTTGGTCTACATCAATCAGGTGACCGGACTCAGTACATACGAAGCTCCATCACTGGAGGAGAATCCCGTACCCTGCTCCAAAGATGTCACCAATATGGCGGTCAGCGTTGTTTCTAAAACAGgGTTTGAGTACAGGTGCTACCCGTTTCAGACAGATATTGTACTGCCCTTTCTCCCCAAACCCAGCGCAATAAGAGCCTTAGCTTCCAGCGTAGGCTGCAGAGATGAGCTCCAGGGTCCTGGTTCACTTTCTGCTCTCTTCTCGGAGTGGAATAACCCAGTGTTCGTACGACCCCCTCAAgTGGCTGTTGACGTGACCAGTGTACAGGGAGAAGGCCTGGCTGTGAAAATCCATAACATCCTTTTTCCCTATCGCTTCACTAAGAATATGATCCACTCTATGAAGGTTATTCATCAAGTAGACAAGAAATTCCTCGCCTGTCTTATAAACACAACAGACCAGGAGAGCACAGAGACGAGTCAagGAaacctgctggtgctgctggatCAACACGCTGCACATGAAAGGGTTCGCCTGGAGGGGCTTCTAACAGAGTcgtatgaagatgatccagaTACTCCAGGTAAAAACAGGCTGTGCTCCTCAGGTGTGATTCCTCCTCTGGAGATCAGTGTGAGCGAGGAGGAGATCAGACTGTTAAGGTTGTATCAGTCTTCTCTAAGAGATCTGGCTCTAGAGATGAGCTTTCCCCCAGCAGATCCCTCACACGTGCTTCTGGAGCGACTCCCCACCTGTTTTATTGAGAAGGAGAACACAGAGCAGCGGCGCGGCCGACGCACCGTCATCAAGTCTCTCTCAGAgGAATACTTGCGGGAGCACATTGAGTTTCTGCAGTCGGCAGGAAGAGTGAGGAGCTCTGTGCCTCTCACCGTCCACAACGTCCTCGCTTCACAAGCCTGTCATGGAGCAATTAAATTCAATGATGTTTTGAGTAAAGAGGAGTGCTGCAGTCTGGTGGGATCCCTCTCATCCTGCCAGCTGCCCTTTCAGTGTGCCCACGGCAGACCCTCCATCGTCCCTCTGGTTGATCTTCTTCACTTAGAGGACGAGCAGGACCTTCCAAAACCGAACCTCAAGAAACTGAGAAGAATGTACAAGGCATGGCAGCTTTATGGACAGAATTAATTTATGCAAAATATGAATTTCAGGAAAGAAGATGCActttacaattttacattaaattatttgttttgatAAA
>XM_015602027.2
agagactCTCTGATTGTAGATCATAACAGAGCCGGTGAACCGGCGGGTTGTTATGGGGGGAAACTCGAGCGCTTATTTtggatttactgtaatttataacatatttattCATCTAAAACGTTGTTTTTGTGGTTCCTAAAGATAACCCAGTAAACAGGGCGCTGTTACAGCTGTCTGAGGGAAGAAGCGGGgcgcttttaaactgtaaattggGAGATTTCTCCTTTTTAACCCAATATGTTGTGTTTACCTTAAATCTGGGGCTGTTATTTAAAGaatgatcAGGACTCTTTCCAAAGAAGTTCAAGCGAAGCTGCGTTCTGGCGTCGCTGTTTTCTccctgcagcagtgtgtggaggagcTTGTTCTGAACAGCATTGATGCTGGAGCGACATGCATCGCTGTGAAGATCGACATCGAAGCCTGCAAAGTTCAGGTGATAGACAACGGCTCCGGGATGAGCCGAGAGGACATGGAGAAGGTGGGGACGAGGTACTGCACCAGCAAGTGCAGCTCGCTGGAGGACCTGGATGACCTGAGATTCTATGGGTTCAGAGGGGAGGCCATTGCCAGCATCGCCTCTCTTTCTACCTTGGTGGAAATATCCTCACAGACCAAGGCGTCGGTGAAAACGTTCGTTAAAACCTTTAATGAAGGCAGGGGGTCAGGCGTTTGCGAGGTGCAGGATACCCGTCCGTCACCCGGGACTACGGTGCTGATCTGCAACTTCTTTCATAACATGCCGGTCAGGAGGAAGAGGATGGACTCTGTGCTGGAGGTTGAGCGTCTTCGGCAGAGAGTGGAGGCCATATCCCTGATGCATCCGTCCGTATCGTTCACTGTGAAGAAGGACTGCTCGGGGACCATGCTGGTGCAGCTTCCCAAAGCCAGGAATACCTACTACAGGTTTGTTCAGATCCATGGATTGGGAAGAGCTCAGAAGCTCAGAGAGGTGAACTTCACTCACGGACAGTTTGAGATGACTGGATCGATTGGGCGCGAGGGTCATTACAAAAACAGCCTGCAGTTTTTGTTCGTAAACAGCAGACTCGTGCTGAAAACACGCCTTCACAAACTACTCAACTGCCTGCTCAGGAAACTGAGCAGCTCTAGCATCCAAAACAACAGTCCCAATGCCTCTGCTGTCACCTCCAGCCCCAAGCAAAGAGGAGGCGCCGATTCACACGGCGTTTACGTCATCAACCTGAAGTGCCCCTACTCTGATTATGATGTTTGCCTGGAGCCGGCGAAGAGTCTTATCGAGTTCAGAGATTGGGACGCTGTCCTCTTCTGCGTCGAGGAAGGCGTGAAATCGTTTCTCACAAAGGAAAACTTGGTCTCAGAATTTTCTGTGAGTGACGCCCAAACCTTTGCGAGTGTTTTTAGCGACCCAACAGGTAGTAGTTGCCCATGCAGTAAAGCGACGGCACAGTCGCGGGACAAAGAGTCGACAGTGTGCGAAAGTGACTTAAACGGAAATATGACTCAGGTTAACTCAGGTGATCAAACGGAAAGTGTCCAAAATCTAAGTTTCGACCAAATTTTTGACAGAGGGTCCTCAAATGCAGAGTCTGCGGCAGGTTCAGAAGCAGAGGCAGAAAGTAAAGAAGTTCAGAGTGTTGAAAAACCTTCGCTGCAGAGAGATCTCGAAGATTACGGGAATTCGCAAGACTTTGAAACGAGTGTCCATGACCTGCAACTTATTGATACCCTCAGCAACAACAGTACAATGACACATCAGGAATTTACGCAAAGCAAGGTTGCCGTAATTGGTCCTAACGAAGCTCAGGACAGTTTGAGAAGATTTGCAGAGCCTAACATCTGCTGTGCACCAAAGAGAAAACTGTCCTTGCTCCAAACTCAGAGTTTGTGCTTAGAAAGTGGCGTTGGGCCCAAAATGGCAAAGGTCGCGCCACGTCGCAAATTAACACTGGCTTTTGAAACGGGATCTCTTGACAAGTTCAAGAGGATGTACGGAAAATCTTCTGAGACAAAACGTCAGTCTGTGGAAACACAAATCGCTAATGCTTTACAACCTTCAGACTGTGTATTATCTTCTGAAGGTCCTGCATTGCCTGCTTTACAAGGTACCGGCGTCAGTTCACTCATCTTTGAGCCTGAACAAGTCGAAAAGACTGAAAAGACTCATTCTGAGAACTTCTTAATCAAAAAAGACAGTATGCTTACACTTTCTGCTTACAGCCAAACGAAATGTTCAACATCAGCCAGCTCAAGGACTAAAATATCATTAGCTGCAAAGCTCTCGCACTTAAAATGCGACAAGATAGTTCAGAAGGAGAAAACACCTTATGAAGAAGGAACTTTTGATGATACCAGAAATGAAGAAACTACCTCTGTAACCCAACATGCTCAACGTGCAGCAGACTCTGAGGAGACGTTTGAAGACTCTCTGTCTCAGTTTAAAACTTCAGAGGACACTGACGGTTCTTCAAAACAAATGACTGAGACAAATGATCCAAATGAACCCACCCACAAATTCACTGTTCCCAATTTACCTAACCCATCAGCTGGAGACGCTCTAAAAAGAGTTTCTGAACTCATGACTTCCTCAGAGCCAGCTATTCCCTCAGGACACGTAATTAACCCTGCATCACAACATGAGCCTCTGCCCACCCAAACAGGAAATGAGGTCCAGGCTCCAGACGAAAGTCCGGGCGATGAAAGTGATGTGCCGGCCCTGGTGTCGAGTGACTGGAGGACACATTACGACGACTCTCTGGGAAAGTTGGTCTACATCAATCAGGTGACCGGACTCAGTACATACGAAGCTCCATCACTGGAGGAGAATCCCGTACCCTGCTCCAAAGATGTCACCAATATGGCGGTCAGCGTTGTTTCTAAAACAGATGAGCTCCAGGGTCCTGGTTCACTTTCTGCTCTCTTCTCGGAGTGGAATAACCCAGTGTTCGTACGACCCCCTCAAgTGGCTGTTGACGTGACCAGTGTACAGGGAGAAGGCCTGGCTGTGAAAATCCATAACATCCTTTTTCCCTATCGCTTCACTAAGAATATGATCCACTCTATGAAGGTTATTCATCAAGTAGACAAGAAATTCCTCGCCTGTCTTATAAACACAACAGACCAGGAGAGCACAGAGACGAGTCAagGAaacctgctggtgctgctggatCAACACGCTGCACATGAAAGGGTTCGCCTGGAGGGGCTTCTAACAGAGTcgtatgaagatgatccagaTACTCCAGGTAAAAACAGGCTGTGCTCCTCAGGTGTGATTCCTCCTCTGGAGATCAGTGTGAGCGAGGAGGAGATCAGACTGTTAAGGTTGTATCAGTCTTCTCTAAGAGATCTGGCTCTAGAGATGAGCTTTCCCCCAGCAGATCCCTCACACGTGCTTCTGGAGCGACTCCCCACCTGTTTTATTGAGAAGGAGAACACAGAGCAGCGGCGCGGCCGACGCACCGTCATCAAGTCTCTCTCAGAgGAATACTTGCGGGAGCACATTGAGTTTCTGCAGTCGGCAGGAAGAGTGAGGAGCTCTGTGCCTCTCACCGTCCACAACGTCCTCGCTTCACAAGCCTGTCATGGAGCAATTAAATTCAATGATGTTTTGAGTAAAGAGGAGTGCTGCAGTCTGGTGGGATCCCTCTCATCCTGCCAGCTGCCCTTTCAGTGTGCCCACGGCAGACCCTCCATCGTCCCTCTGGTTGATCTTCTTCACTTAGAGGACGAGCAGGACCTTCCAAAACCGAACCTCAAGAAACTGAGAAGAATGTACAAGGCATGGCAGCTTTATGGACAGAATTAATTTATGCAAAATATGAATTTCAGGAAAGAAGATGCActttacaattttacattaaattatttgttttgatAAA

Function

symbol description
mlh3 Predicted to enable ATP hydrolysis activity. Predicted to be involved in mismatch repair. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of mismatch repair complex. Human ortholog(s) of this gene implicated in Lynch syndrome; colorectal cancer; endometrial cancer; and hereditary nonpolyposis colorectal cancer type 7. Orthologous to human MLH3 (mutL homolog 3).

NR:

description
DNA mismatch repair protein Mlh3 isoform X1

GO: NA

KEGG:

id description
K08739 MLH3; DNA mismatch repair protein MLH3

RNA

RNA id representative length rna type GC content exon number start site end site
TU176968 False 866 lncRNA 0.47 7 9916832 9920965
XM_007235742.3 True 3965 mRNA 0.48 13 9911307 9920995
XM_015602027.2 False 3863 mRNA 0.48 12 9911307 9920995

Neighbor

gene id symbol gene type direction distance location
LOC103043867 LOC108433414,LOC104967021,LOC106572606 coding upstream 64565 9822632 ~ 9846742 (+)
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107599644,LOC107697860 coding upstream 112414 9796191 ~ 9798893 (+)
LOC103044467 LOC108433411,LOC108276259 coding upstream 117891 9774110 ~ 9793416 (+)
LOC111194074 calcoco1a,LOC108433409 coding upstream 265541 9618358 ~ 9645766 (+)
cbx5 cbx5,LOC103047453,LOC107664188,LOC107707003,LOC107714996 coding upstream 578889 9322681 ~ 9332418 (+)
LOC103039028 LOC108433422 coding downstream 8840 9929835 ~ 9976607 (+)
c1qtnf12 fam132a,LOC107591142,LOC107687484,LOC107716139,LOC107593919 coding downstream 100770 10021765 ~ 10060015 (+)
LOC103041698 olfml3a,LOC108433368,LOC107716140,LOC107687444,LOC107593917,LOC108276296 coding downstream 187171 10108166 ~ 10115520 (+)
klhl21 klhl21,LOC107687446,LOC107593916,LOC107716146 coding downstream 325583 10246578 ~ 10263598 (+)
nol9 nol9 coding downstream 350775 10271770 ~ 10284418 (+)
G130864 kansl2,LOC107591080,LOC107737532,LOC107716132,LOC107687436,LOC107593923 non-coding upstream 31730 9878308 ~ 9879577 (+)
G130842 NA non-coding upstream 63107 9819634 ~ 9848200 (+)
G130849 NA non-coding upstream 81887 9829159 ~ 9829420 (+)
G130814 NA non-coding upstream 243205 9665520 ~ 9668102 (+)
G130811 NA non-coding upstream 254947 9655387 ~ 9656360 (+)
G130855 NA non-coding downstream 25215 9946210 ~ 9978596 (+)
G130854 NA non-coding downstream 57860 9978855 ~ 9981835 (+)
G130856 NA non-coding downstream 60003 9980998 ~ 10042081 (+)
G130884 NA non-coding downstream 86024 10007019 ~ 10012404 (+)
G130935 NA non-coding downstream 144880 10065875 ~ 10066115 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other upstream 39535 9856406 ~ 9871772 (+)
G130844 NA other upstream 153956 9756952 ~ 9757351 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other upstream 589227 9306154 ~ 9322080 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other upstream 717529 9132575 ~ 9193778 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other upstream 791525 9117170 ~ 9119782 (+)
LOC103038829 NA other downstream 1986 9922981 ~ 9928233 (+)
LOC107197146 NA other downstream 894865 10815860 ~ 10829558 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other downstream 1570568 11491563 ~ 11502723 (+)
LOC111194085 LOC108425553 other downstream 2001345 11922340 ~ 11978761 (+)
LOC103031050 NA other downstream 2319701 12240696 ~ 12334090 (+)

Expression


Co-expression Network