RNA id: XM_015602027.2


Basic Information

Item Value
RNA id XM_015602027.2
length 3863
RNA type mRNA
GC content 0.48
exon number 12
gene id mlh3
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9911307 ~ 9920995 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagactCTCTGATTGTAGATCATAACAGAGCCGGTGAACCGGCGGGTTGTTATGGGGGGAAACTCGAGCGCTTATTTtggatttactgtaatttataacatatttattCATCTAAAACGTTGTTTTTGTGGTTCCTAAAGATAACCCAGTAAACAGGGCGCTGTTACAGCTGTCTGAGGGAAGAAGCGGGgcgcttttaaactgtaaattggGAGATTTCTCCTTTTTAACCCAATATGTTGTGTTTACCTTAAATCTGGGGCTGTTATTTAAAGaatgatcAGGACTCTTTCCAAAGAAGTTCAAGCGAAGCTGCGTTCTGGCGTCGCTGTTTTCTccctgcagcagtgtgtggaggagcTTGTTCTGAACAGCATTGATGCTGGAGCGACATGCATCGCTGTGAAGATCGACATCGAAGCCTGCAAAGTTCAGGTGATAGACAACGGCTCCGGGATGAGCCGAGAGGACATGGAGAAGGTGGGGACGAGGTACTGCACCAGCAAGTGCAGCTCGCTGGAGGACCTGGATGACCTGAGATTCTATGGGTTCAGAGGGGAGGCCATTGCCAGCATCGCCTCTCTTTCTACCTTGGTGGAAATATCCTCACAGACCAAGGCGTCGGTGAAAACGTTCGTTAAAACCTTTAATGAAGGCAGGGGGTCAGGCGTTTGCGAGGTGCAGGATACCCGTCCGTCACCCGGGACTACGGTGCTGATCTGCAACTTCTTTCATAACATGCCGGTCAGGAGGAAGAGGATGGACTCTGTGCTGGAGGTTGAGCGTCTTCGGCAGAGAGTGGAGGCCATATCCCTGATGCATCCGTCCGTATCGTTCACTGTGAAGAAGGACTGCTCGGGGACCATGCTGGTGCAGCTTCCCAAAGCCAGGAATACCTACTACAGGTTTGTTCAGATCCATGGATTGGGAAGAGCTCAGAAGCTCAGAGAGGTGAACTTCACTCACGGACAGTTTGAGATGACTGGATCGATTGGGCGCGAGGGTCATTACAAAAACAGCCTGCAGTTTTTGTTCGTAAACAGCAGACTCGTGCTGAAAACACGCCTTCACAAACTACTCAACTGCCTGCTCAGGAAACTGAGCAGCTCTAGCATCCAAAACAACAGTCCCAATGCCTCTGCTGTCACCTCCAGCCCCAAGCAAAGAGGAGGCGCCGATTCACACGGCGTTTACGTCATCAACCTGAAGTGCCCCTACTCTGATTATGATGTTTGCCTGGAGCCGGCGAAGAGTCTTATCGAGTTCAGAGATTGGGACGCTGTCCTCTTCTGCGTCGAGGAAGGCGTGAAATCGTTTCTCACAAAGGAAAACTTGGTCTCAGAATTTTCTGTGAGTGACGCCCAAACCTTTGCGAGTGTTTTTAGCGACCCAACAGGTAGTAGTTGCCCATGCAGTAAAGCGACGGCACAGTCGCGGGACAAAGAGTCGACAGTGTGCGAAAGTGACTTAAACGGAAATATGACTCAGGTTAACTCAGGTGATCAAACGGAAAGTGTCCAAAATCTAAGTTTCGACCAAATTTTTGACAGAGGGTCCTCAAATGCAGAGTCTGCGGCAGGTTCAGAAGCAGAGGCAGAAAGTAAAGAAGTTCAGAGTGTTGAAAAACCTTCGCTGCAGAGAGATCTCGAAGATTACGGGAATTCGCAAGACTTTGAAACGAGTGTCCATGACCTGCAACTTATTGATACCCTCAGCAACAACAGTACAATGACACATCAGGAATTTACGCAAAGCAAGGTTGCCGTAATTGGTCCTAACGAAGCTCAGGACAGTTTGAGAAGATTTGCAGAGCCTAACATCTGCTGTGCACCAAAGAGAAAACTGTCCTTGCTCCAAACTCAGAGTTTGTGCTTAGAAAGTGGCGTTGGGCCCAAAATGGCAAAGGTCGCGCCACGTCGCAAATTAACACTGGCTTTTGAAACGGGATCTCTTGACAAGTTCAAGAGGATGTACGGAAAATCTTCTGAGACAAAACGTCAGTCTGTGGAAACACAAATCGCTAATGCTTTACAACCTTCAGACTGTGTATTATCTTCTGAAGGTCCTGCATTGCCTGCTTTACAAGGTACCGGCGTCAGTTCACTCATCTTTGAGCCTGAACAAGTCGAAAAGACTGAAAAGACTCATTCTGAGAACTTCTTAATCAAAAAAGACAGTATGCTTACACTTTCTGCTTACAGCCAAACGAAATGTTCAACATCAGCCAGCTCAAGGACTAAAATATCATTAGCTGCAAAGCTCTCGCACTTAAAATGCGACAAGATAGTTCAGAAGGAGAAAACACCTTATGAAGAAGGAACTTTTGATGATACCAGAAATGAAGAAACTACCTCTGTAACCCAACATGCTCAACGTGCAGCAGACTCTGAGGAGACGTTTGAAGACTCTCTGTCTCAGTTTAAAACTTCAGAGGACACTGACGGTTCTTCAAAACAAATGACTGAGACAAATGATCCAAATGAACCCACCCACAAATTCACTGTTCCCAATTTACCTAACCCATCAGCTGGAGACGCTCTAAAAAGAGTTTCTGAACTCATGACTTCCTCAGAGCCAGCTATTCCCTCAGGACACGTAATTAACCCTGCATCACAACATGAGCCTCTGCCCACCCAAACAGGAAATGAGGTCCAGGCTCCAGACGAAAGTCCGGGCGATGAAAGTGATGTGCCGGCCCTGGTGTCGAGTGACTGGAGGACACATTACGACGACTCTCTGGGAAAGTTGGTCTACATCAATCAGGTGACCGGACTCAGTACATACGAAGCTCCATCACTGGAGGAGAATCCCGTACCCTGCTCCAAAGATGTCACCAATATGGCGGTCAGCGTTGTTTCTAAAACAGATGAGCTCCAGGGTCCTGGTTCACTTTCTGCTCTCTTCTCGGAGTGGAATAACCCAGTGTTCGTACGACCCCCTCAAgTGGCTGTTGACGTGACCAGTGTACAGGGAGAAGGCCTGGCTGTGAAAATCCATAACATCCTTTTTCCCTATCGCTTCACTAAGAATATGATCCACTCTATGAAGGTTATTCATCAAGTAGACAAGAAATTCCTCGCCTGTCTTATAAACACAACAGACCAGGAGAGCACAGAGACGAGTCAagGAaacctgctggtgctgctggatCAACACGCTGCACATGAAAGGGTTCGCCTGGAGGGGCTTCTAACAGAGTcgtatgaagatgatccagaTACTCCAGGTAAAAACAGGCTGTGCTCCTCAGGTGTGATTCCTCCTCTGGAGATCAGTGTGAGCGAGGAGGAGATCAGACTGTTAAGGTTGTATCAGTCTTCTCTAAGAGATCTGGCTCTAGAGATGAGCTTTCCCCCAGCAGATCCCTCACACGTGCTTCTGGAGCGACTCCCCACCTGTTTTATTGAGAAGGAGAACACAGAGCAGCGGCGCGGCCGACGCACCGTCATCAAGTCTCTCTCAGAgGAATACTTGCGGGAGCACATTGAGTTTCTGCAGTCGGCAGGAAGAGTGAGGAGCTCTGTGCCTCTCACCGTCCACAACGTCCTCGCTTCACAAGCCTGTCATGGAGCAATTAAATTCAATGATGTTTTGAGTAAAGAGGAGTGCTGCAGTCTGGTGGGATCCCTCTCATCCTGCCAGCTGCCCTTTCAGTGTGCCCACGGCAGACCCTCCATCGTCCCTCTGGTTGATCTTCTTCACTTAGAGGACGAGCAGGACCTTCCAAAACCGAACCTCAAGAAACTGAGAAGAATGTACAAGGCATGGCAGCTTTATGGACAGAATTAATTTATGCAAAATATGAATTTCAGGAAAGAAGATGCActttacaattttacattaaattatttgttttgatAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176952 lncRNA upstream 31730 9878308 ~ 9879577 (+) True G130864
TU176926 lncRNA upstream 63107 9819634 ~ 9848200 (+) True G130842
TU176933 lncRNA upstream 81887 9829159 ~ 9829420 (+) True G130849
TU176883 lncRNA upstream 243205 9665520 ~ 9668102 (+) True G130814
TU176879 lncRNA upstream 254947 9655387 ~ 9656360 (+) True G130811
XR_002650880.1 lncRNA downstream 1986 9922981 ~ 9928233 (+) True LOC103038829
TU176940 lncRNA downstream 25215 9946210 ~ 9978596 (+) True G130855
TU176939 lncRNA downstream 57860 9978855 ~ 9981835 (+) True G130854
TU176941 lncRNA downstream 60003 9980998 ~ 10042081 (+) True G130856
TU176978 lncRNA downstream 86024 10007019 ~ 10012404 (+) True G130884
XM_022677077.1 mRNA upstream 64565 9822632 ~ 9846742 (+) True LOC103043867
XM_022677078.1 mRNA upstream 64565 9822632 ~ 9846742 (+) False LOC103043867
XM_007235739.3 mRNA upstream 112414 9796191 ~ 9798893 (+) True mfsd5
XM_022677081.1 mRNA upstream 117891 9774110 ~ 9793416 (+) True LOC103044467
XM_022677073.1 mRNA upstream 265541 9627009 ~ 9645766 (+) False LOC111194074
XM_022677075.1 mRNA downstream 8840 9929835 ~ 9976607 (+) True LOC103039028
XM_022677074.1 mRNA downstream 27901 9948896 ~ 9975955 (+) False LOC103039028
XM_022677076.1 mRNA downstream 27902 9948897 ~ 9974970 (+) False LOC103039028
XM_022677090.1 mRNA downstream 100770 10021765 ~ 10060015 (+) True c1qtnf12
XM_022677093.1 mRNA downstream 187171 10108166 ~ 10115520 (+) True LOC103041698
XR_002650874.1 other upstream 39535 9868088 ~ 9871772 (+) True LOC111194075
TU176943 other upstream 39716 9856406 ~ 9871591 (+) False LOC111194075
TU176928 other upstream 153956 9756952 ~ 9757351 (+) True G130844
TU176541 other upstream 589227 9316238 ~ 9322080 (+) False nfe2
TU176945 other downstream 2022 9923017 ~ 9928014 (+) False LOC103038829
TU177643 other downstream 1570568 11491563 ~ 11502723 (+) True G131313
TU177886 other downstream 2030593 11951588 ~ 11956334 (+) True LOC111194085
TU178139 other downstream 2992496 12913491 ~ 12940847 (+) True G131677
TU178687 other downstream 5247013 15168008 ~ 15172897 (+) True G132109

Expression Profile