RNA id: TU176939


Basic Information

Item Value
RNA id TU176939
length 338
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G130854
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9978855 ~ 9981835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattgattcaagcagttcagtttggtggtttgatggcttgtgatcatccatcttcctcttgattatattccagagatttttaatttggtaaaattaaagaaactcatcctttttaggtgctctcttattttacaGGGTCGTGAGGGCGTGGCCGAGTCCTCCATCCTGCTGCTGGCAGCTTCCTCCCGACACAAGTAATCAAGAATAGGCCGTACTACAGAGAACCAACCTATCCTGGATTACTTGAACCAGGCAAAAGCCGAAACCGGATTCCCAGAGGATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176940 lncRNA upstream 259 9946210 ~ 9978596 (+) True G130855
XR_002650880.1 lncRNA upstream 50622 9922981 ~ 9928233 (+) True LOC103038829
TU176968 lncRNA upstream 57890 9916832 ~ 9920965 (+) False mlh3
TU176952 lncRNA upstream 99278 9878308 ~ 9879577 (+) True G130864
TU176926 lncRNA upstream 130655 9819634 ~ 9848200 (+) True G130842
TU176978 lncRNA downstream 25184 10007019 ~ 10012404 (+) True G130884
TU177054 lncRNA downstream 84040 10065875 ~ 10066115 (+) True G130935
TU177055 lncRNA downstream 84984 10066819 ~ 10067075 (+) True G130936
TU177057 lncRNA downstream 103737 10085572 ~ 10089354 (+) True G130938
TU177064 lncRNA downstream 152892 10134727 ~ 10191841 (+) True G130944
XM_022677075.1 mRNA upstream 2248 9929835 ~ 9976607 (+) True LOC103039028
XM_022677074.1 mRNA upstream 2900 9948896 ~ 9975955 (+) False LOC103039028
XM_022677076.1 mRNA upstream 3885 9948897 ~ 9974970 (+) False LOC103039028
XM_007235742.3 mRNA upstream 57860 9911307 ~ 9920995 (+) True mlh3
XM_015602027.2 mRNA upstream 57860 9911307 ~ 9920995 (+) False mlh3
XM_022677090.1 mRNA downstream 39930 10021765 ~ 10060015 (+) True c1qtnf12
XM_022677093.1 mRNA downstream 126331 10108166 ~ 10115520 (+) True LOC103041698
XM_022677101.1 mRNA downstream 264743 10246578 ~ 10263598 (+) False klhl21
XM_022677102.1 mRNA downstream 270401 10252236 ~ 10263598 (+) True klhl21
XM_022677100.1 mRNA downstream 289935 10271770 ~ 10284418 (+) False nol9
TU176945 other upstream 50841 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 107083 9868088 ~ 9871772 (+) True LOC111194075
TU176943 other upstream 107264 9856406 ~ 9871591 (+) False LOC111194075
TU176928 other upstream 221504 9756952 ~ 9757351 (+) True G130844
TU176542 other upstream 659280 9316238 ~ 9319575 (+) False nfe2
TU177643 other downstream 1509728 11491563 ~ 11502723 (+) True G131313
TU177886 other downstream 1969753 11951588 ~ 11956334 (+) True LOC111194085
TU178139 other downstream 2931656 12913491 ~ 12940847 (+) True G131677
TU178687 other downstream 5186173 15168008 ~ 15172897 (+) True G132109
TU178688 other downstream 5186173 15168008 ~ 15172787 (+) False G132109

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044126 True 97 miRNA 0.48 1 NC_007134.7 24675207 ~ 24675303 (-)
striped catfish (Pangasianodon hypophthalmus) TU305176 True 3173 lncRNA 0.37 4 NC_047610.1 20058251 ~ 20070248 (+)