RNA id: TU178688


Basic Information

Item Value
RNA id TU178688
length 2234
RNA type TUCP
GC content 0.42
exon number 4
gene id G132109
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 15168008 ~ 15172897 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTACAACGTCCAAAGGTATAAAACTATAAAGCATTCAAATGTAttactttaaaaagtctttattaaATTGGGCATTTTGAAAAGTATTTACAGGCAGATTTCCATGTTTGCACGTCAGTCACAACAAAAATCTTTCTGGTAGATCTTACACAGTATGACAGGTGGACATTTGCCAAGATTAAAGGGTGTATTCCCTAAAAACGCAGGGAATTTTCAGACATCATTCAAGGTCCACCCTGCCAGGAGGCATTAGGTACATGAATAAGATTCATTAAATGAAAAGGCAGGGAAATATATGGTAATTTGGCTCTCTGTGGAACTGTATTGCAAGAGCCAGAGACTGAGTTAAATCTTCAGCTGAAGTTTAAGTGATGAACCACTGATGCTGTACAATATCTTcggtttttaaaaacagtttaatctCTTATAGGATATGCAGTACTCCAGTTTTAGAGGCGCCTCCTTGCAGACGGTCTTAATCTACAAGAAACAAAAGCTCTCTATTGCACCACCACTAGATTAAAAACCTAATAAACTGATATTTTCTTCAGCCTCTTGCAGTTTCCTCAACAACCTGAGTTTCTACTTCAataaagaaaatggaaaaacaaaaataactgaCAGCAAATACAAAAAGACAGGGAAGCAAGAGGAGCCGGCCAAATTCATATCCCCTTGCACGTCTCCCTTTGGTTCTTTCCAGCACCACAAACATACAGAAGTTTTCATTTGATTTGTTATTTTGCGTAAGTGATATGCAGGTTGCTAAACAAAACTATCTTcagaaatcattaaaaaaaaggcagaaaagtCTTTAAATATGTCACATAATTTCTTCTCTACTATTtgctttaaagtttttttttccttttcttttttatgtagaAATCAGGACACTCTGCAGAAGacccaagattaaaaaataatattaataaccgTAAACAACAAAACTTAAGAGACTTGCTGAGTTTCCACAGAACCCTCACTGTTCCCTTCCCAATTAAAAAGTGTATGGCAATTGAAAGACTAGGCCATAAATAGCCAAAataaaaaaccaaaaaaacgaCTTAATACAAAAGCTTGCGATAAACAACATGGAAAGGGATGATTGAAAGAAAAATGATCAACACTATCCTTAACATTATTGCTGAGAGCTGGTGGCCTGCGTCATTCTTTCTgtgccactctctctctttctcgtctCATCACACTTTGTTCATCAACCGTCTTTGCAAAGAAGGCTTCATGGCTGATCTCCATGTCGCTTAGTAGCCAAAGGCTGTCCATTGGCAGGCAGGTCACCAGTCACAGTTGAGTAATAGGCATTATCAGGGAGGTGAAACTAATTTGCAGGTGGGTGGGTGTTTGGGTGACTTGAGGGGGGATGGGGGTAGAGGATCACAGTGAGCATTGTCCAGAAGAAATAGTCCTCATCACAGTGTAAAATGgaggtaagatttttttttttctttttttaccccCCCATTTGCTCTTCCGTGTTATTTTCTCCCCTTTTACATTCCAAGCTGCCACAGCAGCCACGATGGGTGGGAGGGTTTTCTTCTCTCATAATTATTTCATAAACATCACATATCCTAAatcttgatttaaaaaataagaatcttAACTTTATGCTGGGAGATGGATCAACAGCTCTCCTCTCTTCCCAGACCTTTATTCCTATCTGTGCTGGCGAAAGCCTTGTGTACCATCTGGGCCTGCTGGCTGTCGAACCACATGGTTGTTGGATCTCACGTCCTCTGAAGGTGTATGGCTGCCTCCACGCGGTGATCTGTCCGAAACAGGTCTCTCTTGAGGTGCGTCATCGGCACTCCCAAGGATTCTCTTCCTGGCTTCGGCGTACTCTGCCTCCCTCTGAGCTAAGGACTTCACTTGTGGTGAGGGTCTGTTCTGGGTTGCAGAAGACCCTAGGGATCCGTTGCTGGTGGGTCGTTTCAGAATGCGGATCTGTGGAGGCGGTGCGGCTGGAAGGGAGTCATCTTGAATCATGATGGCTGTCCTTATCGGAGAGCGACCTGAACTCCCACTTGAAAGTCTCTCTTTTTGGCTAATCCGTAGCTTCTCTTCTAATCTTTTCTccatttcCCCACTGTCCGCGGCCTCTTCCCAGCTCTCAGcgacctcctcctcctccatatTCCTACTCCCTGGAAGCTTCAGCTCGGCGGGGTTTCCTCCGCTGCCTGCGCGCACACAGGCACATTTTATTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178689 lncRNA upstream 20925 15146348 ~ 15147083 (+) True G132110
TU178651 lncRNA upstream 442938 14724646 ~ 14725070 (+) True G132081
TU178501 lncRNA upstream 953191 14212780 ~ 14214817 (+) True LOC111194092
XR_002650893.1 lncRNA upstream 953583 14212845 ~ 14214425 (+) False LOC111194092
TU178484 lncRNA upstream 1066695 14096615 ~ 14101313 (+) True G131937
TU178695 lncRNA downstream 6069 15178856 ~ 15180434 (+) True G132115
TU178694 lncRNA downstream 7060 15179847 ~ 15180855 (+) False G132115
TU178731 lncRNA downstream 107010 15279797 ~ 15280147 (+) True G132148
TU178739 lncRNA downstream 210687 15383474 ~ 15387536 (+) True G132154
TU178737 lncRNA downstream 210765 15383552 ~ 15387536 (+) False G132154
XM_022677233.1 mRNA upstream 49 15129011 ~ 15167959 (+) False atp13a2
XM_022677235.1 mRNA upstream 49 15131432 ~ 15167959 (+) True atp13a2
XM_007246865.3 mRNA upstream 418798 14712825 ~ 14749210 (+) True LOC103046256
XM_015605182.2 mRNA upstream 465020 14690354 ~ 14702988 (+) True LOC103045943
XM_007246863.2 mRNA upstream 493426 14673547 ~ 14674582 (+) True LOC103045636
XM_022677236.1 mRNA downstream 1336 15174123 ~ 15178040 (+) True LOC103029072
XM_007246242.3 mRNA downstream 12109 15184896 ~ 15190420 (+) True tmem82
XM_015605086.2 mRNA downstream 12109 15184896 ~ 15190420 (+) False tmem82
XM_007246244.3 mRNA downstream 22768 15195555 ~ 15236216 (+) True spen
XM_007246248.2 mRNA downstream 118541 15291328 ~ 15329316 (+) True epha2
TU178139 other upstream 2227161 12913491 ~ 12940847 (+) True G131677
TU177886 other upstream 3211674 11951588 ~ 11956334 (+) True LOC111194085
TU177643 other upstream 3665285 11491563 ~ 11502723 (+) True G131313
TU176945 other upstream 5239994 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 5296236 9868088 ~ 9871772 (+) True LOC111194075
XR_002650894.1 other downstream 9563 15182350 ~ 15183567 (+) True LOC103024219
TU178729 other downstream 67293 15240080 ~ 15240397 (+) True G132146
TU178747 other downstream 191692 15364479 ~ 15375581 (+) False fam131c
TU178746 other downstream 202870 15375657 ~ 15397436 (+) False fam131c
TU178833 other downstream 287200 15459987 ~ 15466085 (+) False ddost

Expression Profile