LOC111194092


Basic Information

Item Value
gene id LOC111194092
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 14212780 ~ 14214817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU178501
GTGCTGTTGCTCTCATATCTaccttttcttcctttctttctgtcttttttctgtgtttctttttttctctctctctctcttttattttaaacctttttttctctttttcttttttttactttgggtGTATATGCCTTCGAACATTTAACTTTAACAATTGTgctgaaaatatatatgtgtggatCTATCGCGGCAGATGAGGATCCCTCAGACCTTCAAGCAACTCCAAATCTGCACCCGAGCACATCTGTGGACTCTATCCTTCATTCCACCGGAGTCTGTGtctctaaccaatcagatttcagtggTGTGAAGCATAGAAGACACAGAGCAGTCACATGACCCCTCTTCTGCATACTGAtttggaagaaaaataaaaaaagagcaaaaatttaaaatgttaaataaatgttgaattaaCCGTTGAATTAAcccttttttgtattatttatcacatatttattactttatttaattattttaaatgttgagTTGCACATACCACTGATAGAGATTGATAAATGTTGTCTATTAGAATAGAGCGAGAaacatgaaccagccaatgaaaaaagcttacaagccaataaaacagtagcttagccccgcccacttcacTGGAAAAAATCAGTAGCACTCTTAAACCcaataaaggaaaataataagagCTATTTTTTTAGACACgttaatcatgtttattttactgtgtaggAATGGTTTGTGGaataaaaaaggtcaatataaaaaaaatataaaataaaaatgtgaaacacagGCTTCCACTACAATGgacataaaaaacaattaaatattttagttatattGAT
>XR_002650893.1
tctctctctctctcttttattttaaacctttttttctctttttcttttttttactttgggtGTATATGCCTTCGAACATTTAACTTTAACAATTGTgctgaaaatatatatgtgtggatCTATCGCGGCAGATGAGGATCCCTCAGACCTTCAAGCAACTCCAAATCTGCACCCGAGCACATCTGTGGACTCTATCCTTCATTCCACCGGAGTCTGTGtctctaaccaatcagatttcagtggTGTGAAGCATAGAAGACACAGAGCAGTCACATGACCCCTCTTCTGCATACTGAtttggaagaaaaataaaaaaagagcaaaaatttaaaatgttaaataaatgttgaattaaCCGTTGAATTAA

Function

GO:

id name namespace
GO:0036344 platelet morphogenesis biological_process
GO:0030220 platelet formation biological_process

KEGG:

id description
ko04666 Fc gamma R-mediated phagocytosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU178501 True 824 lncRNA 0.32 2 14212780 14214817
XR_002650893.1 False 367 lncRNA 0.37 2 14212845 14214425

Neighbor

gene id symbol gene type direction distance location
LOC103035899 NA coding upstream 915475 13288244 ~ 13297305 (+)
taf8 taf8,LOC107756368,LOC107549030,LOC107594013,LOC107671856,LOC107723763 coding upstream 936461 13261905 ~ 13276319 (+)
LOC103033882 LOC108425536,LOC107697885,LOC107754893 coding upstream 962254 13223378 ~ 13250526 (+)
LOC103033578 LOC108425537,LOC108425536 coding upstream 1010341 13189728 ~ 13202439 (+)
LOC103039549 NA coding upstream 1031699 13135270 ~ 13181081 (+)
LOC103038967 dnajc11a,LOC103038967,LOC108433830,LOC108276403,LOC107756372,LOC107701714,LOC107586512,LOC107708818 coding downstream 343643 14558460 ~ 14571205 (+)
LOC103039286 LOC108433838 coding downstream 358491 14573308 ~ 14601283 (+)
LOC103045636 NA coding downstream 458730 14673547 ~ 14674582 (+)
LOC103045943 LOC108432535 coding downstream 475537 14690354 ~ 14702988 (+)
LOC103046256 LOC108433885 coding downstream 498008 14712825 ~ 14749210 (+)
G131937 NA non-coding upstream 111467 14096615 ~ 14101313 (+)
G131927 NA non-coding upstream 237443 13975074 ~ 13975337 (+)
G131925 NA non-coding upstream 251487 13960791 ~ 13961293 (+)
G131895 NA non-coding upstream 419580 13781885 ~ 13793200 (+)
LOC111194091 NA non-coding upstream 478721 13731465 ~ 13734059 (+)
G132081 NA non-coding downstream 509829 14724646 ~ 14725070 (+)
G132110 NA non-coding downstream 931531 15146348 ~ 15147083 (+)
G132115 NA non-coding downstream 964039 15178856 ~ 15180855 (+)
G132148 NA non-coding downstream 1064980 15279797 ~ 15280147 (+)
G132154 NA non-coding downstream 1168657 15383474 ~ 15387536 (+)
G131677 NA other upstream 1271933 12913491 ~ 12940847 (+)
sall4 sall4 other upstream 1449070 12689154 ~ 12763710 (+)
LOC103031050 NA other upstream 1878690 12240696 ~ 12334090 (+)
LOC111194085 LOC108425553 other upstream 2234019 11922340 ~ 11978761 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other upstream 2710057 11491563 ~ 11502723 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other downstream 953191 15168008 ~ 15172897 (+)
G132146 LOC106581475 other downstream 1025263 15240080 ~ 15240397 (+)
fam131c fam131c other downstream 1149573 15364390 ~ 15397569 (+)
ddost ddost,LOC107673085,LOC107687429 other downstream 1245045 15459862 ~ 15466085 (+)
LOC103031494 NA other downstream 1516080 15730897 ~ 15737781 (+)

Expression


Co-expression Network