LOC103035899


Basic Information

Item Value
gene id LOC103035899
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 13288244 ~ 13297305 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258790.2
aggaaCTCTCTCTATATAAGTTACTGTAAATAGATCTGACTTCCccatccatacacacactcctTCACCATGCAGACACACACTGCCAGCAGCACAACCTgGATTCTGTTGCTGTTTCTGACGTTTTATGGAGATGCTGAAGCAGCTTCAGTTCTAGCAGCGAGGAGATACCTGACGTGCGAGACACACTCTGCTTATCTCTCCTGCGATTATGGCTATATAAAAATCTACAGTGCGAATTACGGGCGTACGGACAGAACCACCTGCTCGGACGGAGCACCGGCCCATGGGGTTGCGAACGTGCACTGTTTCAGCGAAAGATCTCTTAAAGTCATGTCAGACAGatgTAATGGACGGCGGAGCTGTTCTGTTCCTGTGGTAAACGCAGTCTTCTCTGATCCCTGTATTGGAACTTGGAAATACCTGGATTTTGCGTATCAATGCCTTCCATACAAGCGGAGCGTGATCTGTGAATACGCGGAGGGTGAAATAAGCTGTGacagtggaGTGATTTTCATCCATCATGCCAACTACGGGCGGAGGGATCGGACCACCTGCCCCCATAAACTAGCAACCACATCCGACTGCTACTTCCCCCAGACCTTCAGTCTGCGCTCCAGGTGCAACGGTAAGAAGTCTTGTAGGCTGAGTGCCTCCAACCATGTGTTCTCAGACCCGTGCCATGGTGTCCATAAGTACTTGGAAGTGACCTATAGCTGCAGCTTAAATGAATAAACAAGAGTGTCTCCAGTCATCTCTGTGGAACCTGGGTGGAACCTTGGATGGATGTGAGGATATAGCagatgtttgtatatatataaatatgtataaaataaatccaTTTTCTAGcttaaacacactttactaaacttcataataatgtaaatatctCTGATTATAAACAGacatttcttgtaaaattatGACTCATGgtgatataatgaaaaaaataaaggtctTTAACTTTTT
>XM_022677227.1
gcaggaaCTCTCTCTATATAAGTTACTGTAAATAGATCTGACTTCCccatccatacacacactcctTCACCATGCAGACACACACTGCCAGCAGCACAACCTgGATTCTGTTGCTGTTTCTGACGTTTTATGGAGATGCTGAAGCAGCTTCAGTTCTAGCAGCGAGGAGATACCTGACGTGCGAGACACACTCTGCTTATCTCTCCTGCGATTATGGCTATATAAAAATCTACAGTGCGAATTACGGGCGTACGGACAGAACCACCTGCTCGGACGGAGCACCGGCCCATGGGGTTGCGAACGTGCACTGTTTCAGCGAAAGATCTCTTAAAGTCATGTCAGACAGatgTAATGGACGGCGGAGCTGTTCTGTTCCTGTGGTAAACGCAGTCTTCTCTGATCCCTGTATTGGAACTTGGAAATACCTGGATTTTGCGTATCAATGCCTTCCATACAAGCGGAGCGTGATCTGTGAATACGCGGAGGGTGAAATAAGCTGTGacagtggaGTGATTTTCATCCATCATGCCAACTACGGGCGGAGGGATCGGACCACCTGCCCCCATAAACTAGCAACCACATCCGACTGCTACTTCCCCCAGACCTTCAGTCTGCGCTCCAGGTGCAACGGTAAGAAGTCTTGTAGGCTGAGTGCCTCCAACCATGTGTTCTCAGACCCGTGCCATGGTGTCCATAAGTACTTGGAAGTGACCTATAGCTGCAGCTTAAATGTGagtatttagtgttttatatcaGCA

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258790.2 True 969 mRNA 0.44 9 13288246 13297305
XM_022677227.1 False 758 mRNA 0.49 8 13288244 13295574

Neighbor

gene id symbol gene type direction distance location
taf8 taf8,LOC107756368,LOC107549030,LOC107594013,LOC107671856,LOC107723763 coding upstream 11925 13261905 ~ 13276319 (+)
LOC103033882 LOC108425536,LOC107697885,LOC107754893 coding upstream 37718 13223378 ~ 13250526 (+)
LOC103033578 LOC108425537,LOC108425536 coding upstream 85805 13189728 ~ 13202439 (+)
LOC103039549 NA coding upstream 107163 13135270 ~ 13181081 (+)
LOC103039239 NA coding upstream 156909 13122853 ~ 13131335 (+)
LOC103038967 dnajc11a,LOC103038967,LOC108433830,LOC108276403,LOC107756372,LOC107701714,LOC107586512,LOC107708818 coding downstream 1261155 14558460 ~ 14571205 (+)
LOC103039286 LOC108433838 coding downstream 1276003 14573308 ~ 14601283 (+)
LOC103045636 NA coding downstream 1376242 14673547 ~ 14674582 (+)
LOC103045943 LOC108432535 coding downstream 1393049 14690354 ~ 14702988 (+)
LOC103046256 LOC108433885 coding downstream 1415520 14712825 ~ 14749210 (+)
G131735 NA non-coding upstream 16834 13268558 ~ 13271410 (+)
G131730 NA non-coding upstream 21578 13228261 ~ 13266666 (+)
G131729 NA non-coding upstream 63144 13224338 ~ 13225100 (+)
G131728 NA non-coding upstream 79082 13207133 ~ 13209162 (+)
G131667 NA non-coding upstream 99072 13188300 ~ 13189172 (+)
LOC111194091 NA non-coding downstream 434160 13731465 ~ 13734059 (+)
G131895 NA non-coding downstream 484580 13781885 ~ 13793200 (+)
G131925 NA non-coding downstream 663486 13960791 ~ 13961293 (+)
G131927 NA non-coding downstream 677769 13975074 ~ 13975337 (+)
G131937 NA non-coding downstream 799310 14096615 ~ 14101313 (+)
G131677 NA other upstream 347397 12913491 ~ 12940847 (+)
sall4 sall4 other upstream 524534 12689154 ~ 12763710 (+)
LOC103031050 NA other upstream 954154 12240696 ~ 12334090 (+)
LOC111194085 LOC108425553 other upstream 1309483 11922340 ~ 11978761 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other upstream 1785521 11491563 ~ 11502723 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other downstream 1870703 15168008 ~ 15172897 (+)
G132146 LOC106581475 other downstream 1942775 15240080 ~ 15240397 (+)
fam131c fam131c other downstream 2067085 15364390 ~ 15397569 (+)
ddost ddost,LOC107673085,LOC107687429 other downstream 2162557 15459862 ~ 15466085 (+)
LOC103031494 NA other downstream 2433592 15730897 ~ 15737781 (+)

Expression


Co-expression Network